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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6o7K | 0643 | 2024-03-11 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.010 | 0.91 | 0.0 | 0.05 | 22.81 | 0.01 | 2.040 | 33.34 | 0.04 | 10.7 | 88.8 | 0.5 | -2.23 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 6o9K | 0662 | 2024-03-23 | 2019-03-14 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.96 | — | — | — | 4.0 | 0.007 | 0.92 | 2.0 | 0.04 | 24.18 | 0.01 | 1.729 | 49.48 | 5.60 | 12.2 | 87.1 | 0.7 | -2.94 | — | 0.92 | 0.86 | — | 146597 | 6162 | 55 | 4594 | 0 | 0 | 0 | logfile |
✘ | 6WW7 | 21929 | 2024-03-17 | 2020-05-08 | 3.4 | 3.55 | 3.33 | 3.5 | 0.005 | 0.58 | 0.0 | 0.04 | 15.89 | 0.00 | 2.145 | 6.99 | 2.92 | 2.9 | 97.1 | 0.0 | -2.34 | 0.76 | 0.84 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16576 | 2060 | 13 | 0 | 20 | 0 | 0 | logfile |
✘ | 6SKY | 10231 | 2024-03-18 | 2019-08-16 | 2.8 | 2.95 | — | 3.0 | 0.009 | 0.69 | 0.0 | 0.05 | 13.86 | 0.00 | 2.077 | 5.03 | 3.63 | 4.2 | 95.8 | 0.0 | -2.12 | 0.75 | 0.85 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22348 | 2824 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7P5Y | 13208 | 2024-03-24 | 2021-07-15 | 3.29 | 2.97 | 3.19 | 3.1 | 0.002 | 0.49 | 0.0 | 0.04 | 11.33 | 0.00 | 2.158 | 10.43 | 2.64 | 3.5 | 96.5 | 0.0 | -0.32 | 0.72 | 0.72 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41106 | 5028 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Y3F | 33593 | 2024-03-24 | 2022-06-10 | 2.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39463 | 3158 | 37 | 0 | 1155 | 26 | 0 | logfile |
✘ | 5XNo | 6744 | 2024-03-14 | 2017-05-23 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10020 | 854 | 8 | 0 | 72 | 0 | 0 | logfile |
✘ | 7RL5 | 24516 | 2024-03-15 | 2021-07-23 | 3.8 | 3.61 | — | 3.8 | 0.013 | 2.04 | 24.0 | 0.11 | 16.71 | 0.02 | 0.524 | 3.05 | 2.05 | 3.3 | 96.3 | 0.4 | -1.86 | 0.40 | 0.52 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106032 | 6708 | 24 | 0 | 24 | 0 | 52716 | logfile |
✘ | 8A94 | 15269 | 2024-03-21 | 2022-06-27 | 2.4 | 2.82 | 2.71 | 2.7 | 0.007 | 1.10 | 1.0 | 0.07 | 14.51 | 0.01 | 2.046 | 6.57 | 0.66 | 5.3 | 94.7 | 0.1 | -0.60 | 0.67 | 0.57 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30862 | 3864 | 19 | 0 | 57 | 0 | 0 | logfile |
✘ | 6RX4 | 10049 | 2024-03-11 | 2019-06-07 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7347 | 884 | 8 | 0 | 31 | 7 | 0 | logfile |
✘ | 6RKV | 4912 | 2024-03-16 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 13.18 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✘ | 7NWL | 12634 | 2024-03-16 | 2021-03-17 | 3.1 | 3.95 | 3.38 | 3.5 | 0.013 | 1.48 | 0.0 | 0.11 | 14.02 | 0.02 | 1.790 | 40.24 | 0.93 | 1.9 | 98.0 | 0.1 | 0.97 | 0.80 | 0.66 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13904 | 1747 | 17 | 0 | 40 | 0 | 0 | logfile |
✘ | 6ZDG | 11173 | 2024-03-20 | 2020-06-14 | 4.7 | 4.97 | — | 4.8 | 0.004 | 0.50 | 0.0 | 0.04 | 9.08 | 0.00 | 1.891 | 7.24 | 2.41 | 3.9 | 96.1 | 0.0 | 0.05 | 0.71 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28548 | 1884 | 12 | 0 | 3 | 0 | 13995 | logfile |
✘ | 5YKG | 6833 | 2024-03-25 | 2017-10-14 | 4.57 | 4.68 | 4.39 | 4.4 | 0.005 | 0.71 | 4.0 | 0.04 | 13.81 | 0.01 | 2.245 | 13.33 | 7.90 | 4.2 | 95.6 | 0.1 | -2.42 | 0.73 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 50868 | 6536 | 16 | 0 | 12 | 0 | 0 | logfile |
✘ | 8DBi | 27285 | 2024-03-16 | 2022-06-14 | 2.0 | 2.07 | 2.03 | 2.0 | 0.012 | 1.17 | 0.0 | 0.06 | 18.16 | 0.04 | 1.910 | 5.92 | 1.15 | 4.3 | 95.7 | 0.0 | 0.57 | 0.73 | 0.87 | 6.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14496 | 1854 | 18 | 0 | 30 | 12 | 0 | logfile |
✘ | 6TM5 | 10518 | 2024-03-12 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.83 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |
✘ | 8HTU | 35018 | 2024-03-11 | 2022-12-21 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57715 | 5089 | 51 | 0 | 366 | 2 | 0 | logfile |
✘ | 6MPH | 9189 | 2024-03-22 | 2018-10-06 | 3.8 | 4.28 | — | 3.9 | 0.007 | 0.93 | 0.0 | 0.06 | 18.40 | 0.01 | 2.286 | 6.16 | 6.01 | 5.3 | 94.6 | 0.2 | -3.46 | 0.84 | 0.85 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32092 | 3843 | 72 | 0 | 155 | 0 | 0 | logfile |
✘ | 6EoJ | 3908 | 2024-03-16 | 2017-10-09 | 3.55 | 3.58 | 3.51 | 3.6 | 0.007 | 1.33 | 7.0 | 0.09 | 16.65 | 0.00 | 2.526 | 9.73 | 4.80 | 10.1 | 88.2 | 1.7 | -3.75 | 0.59 | 0.78 | 2.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13688 | 1710 | 4 | 0 | 7 | 0 | 0 | logfile |
✘ | 8iE3 | 35375 | 2024-03-22 | 2023-02-15 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145205 | 7863 | 48 | 3795 | 0 | 0 | 0 | logfile |