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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6PUZ | 20485 | 2024-03-15 | 2019-07-18 | 2.8 | 3.10 | 2.87 | 3.1 | 0.008 | 0.86 | 0.0 | 0.05 | 19.79 | 0.01 | 0.000 | 5.85 | 0.19 | 2.2 | 97.8 | 0.0 | -2.67 | 0.74 | 0.89 | 4.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11702 | 1230 | 28 | 72 | 10 | 340 | 0 | logfile |
✘ | 8AZT | 15771 | 2024-03-10 | 2022-09-06 | 3.7 | 3.48 | 2.93 | 4.2 | 0.011 | 1.98 | 0.0 | 0.11 | 15.54 | 0.01 | 0.000 | 19.56 | 4.35 | 10.3 | 89.7 | 0.0 | -6.12 | 0.40 | 0.59 | 5.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5424 | 744 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BQV | 16188 | 2024-03-11 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✘ | 6PUY | 20484 | 2024-03-15 | 2019-07-18 | 2.8 | 3.15 | 2.88 | 3.1 | 0.015 | 0.90 | 0.0 | 0.06 | 19.87 | 0.01 | 0.000 | 4.36 | 0.19 | 3.0 | 97.0 | 0.0 | -3.07 | 0.75 | 0.90 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11784 | 1232 | 28 | 72 | 10 | 404 | 0 | logfile |
✘ | 8CE7 | 16600 | 2024-03-15 | 2023-02-01 | 2.7 | 2.34 | 2.46 | 2.7 | 0.010 | 1.47 | 12.0 | 0.09 | 13.19 | 0.01 | 0.000 | 16.71 | 3.33 | 9.0 | 91.0 | 0.0 | -3.63 | 0.44 | 0.73 | 6.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10512 | 1512 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 7EFD | 31084 | 2024-03-10 | 2021-03-21 | 1.77 | 1.78 | 1.82 | 1.9 | 0.033 | 3.16 | 12.0 | 0.09 | 15.32 | 0.02 | 0.001 | 1.61 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.74 | 0.82 | 5.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✘ | 8AZS | 15770 | 2024-03-14 | 2022-09-06 | 2.9 | 2.78 | 2.55 | 2.8 | 0.011 | 1.50 | 0.0 | 0.12 | 16.09 | 0.01 | 0.017 | 1346.55 | 0.00 | 3.1 | 96.9 | 0.0 | -1.98 | 0.27 | 0.40 | 5.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9036 | 1224 | 36 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BQW | 16189 | 2024-03-17 | 2023-01-18 | 2.3 | 2.12 | 2.14 | 2.2 | 0.008 | 1.14 | 0.0 | 0.07 | 8.96 | 0.00 | 0.052 | 12.77 | 0.00 | 9.6 | 90.4 | 0.0 | -3.78 | 0.46 | 0.75 | 7.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17385 | 2310 | 90 | 0 | 270 | 135 | 0 | logfile |
✘ | 7o1C | 12695 | 2024-03-24 | 2021-03-29 | 2.6 | 3.02 | 2.70 | 2.4 | 0.018 | 1.90 | 0.0 | 0.06 | 22.52 | 0.02 | 0.055 | 6.76 | 0.04 | 5.1 | 94.8 | 0.1 | -1.96 | 0.80 | 0.83 | 3.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 148175 | 6042 | 76 | 4638 | 489 | 800 | 0 | logfile |
✘ | 7EPP | 31248 | 2024-03-17 | 2021-04-27 | 2.4 | 2.51 | — | 2.6 | 0.004 | 0.67 | 0.0 | 0.04 | 16.13 | 0.01 | 0.073 | 3.24 | 3.57 | 7.3 | 92.7 | 0.0 | -2.99 | 0.64 | 0.81 | 3.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 80520 | 10020 | 60 | 0 | 0 | 1800 | 0 | logfile |
✘ | 3JC7 | 6536 | 2024-03-24 | 2015-11-24 | 4.8 | 5.23 | — | 4.8 | 0.009 | 1.57 | 7.0 | 0.07 | 12.16 | 0.01 | 0.163 | 42.92 | 0.45 | 8.5 | 90.1 | 1.3 | -4.10 | 0.75 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40298 | 5075 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 5UCY | 8539 | 2024-03-19 | 2016-12-22 | 4.6 | 4.99 | — | 4.6 | 0.011 | 1.21 | 3.0 | 0.06 | 13.21 | 0.01 | 0.244 | 89.25 | 0.68 | 11.3 | 88.3 | 0.5 | -4.47 | 0.50 | 0.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24990 | 2610 | 12 | 3 | 6 | 0 | 4452 | logfile |
✘ | 3JC5 | 6535 | 2024-03-24 | 2015-11-24 | 4.7 | 5.02 | — | 4.8 | 0.009 | 1.54 | 5.0 | 0.06 | 12.17 | 0.01 | 0.300 | 46.29 | 0.63 | 9.4 | 88.9 | 1.7 | -4.21 | 0.76 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40041 | 5039 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 6SAG | 10130 | 2024-03-10 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 13.90 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✘ | 7ZGK | 14708 | 2024-03-16 | 2022-04-03 | 3.59 | 4.63 | 3.57 | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 13.81 | 0.00 | 0.454 | 5.10 | 0.46 | 2.2 | 97.6 | 0.2 | 1.65 | 0.73 | 0.55 | 1.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13639 | 1723 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7EWQ | 31361 | 2024-03-24 | 2021-05-25 | 3.5 | 3.98 | — | 3.7 | 0.006 | 0.78 | 0.0 | 0.04 | 15.96 | 0.00 | 0.473 | 31.00 | 0.00 | 6.7 | 93.3 | 0.0 | -3.42 | 0.74 | 0.73 | 2.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40144 | 4862 | 26 | 78 | 0 | 0 | 0 | logfile |
✘ | 7L20 | 23121 | 2024-03-11 | 2020-12-15 | 3.15 | 3.39 | — | 3.4 | 0.007 | 0.87 | 0.0 | 0.05 | 20.07 | 0.01 | 0.505 | 10.97 | 0.84 | 7.3 | 92.2 | 0.5 | -3.38 | 0.69 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110234 | 9454 | 67 | 1583 | 171 | 0 | 0 | logfile |
✘ | 7RL5 | 24516 | 2024-03-15 | 2021-07-23 | 3.8 | 3.61 | — | 3.8 | 0.013 | 2.04 | 24.0 | 0.11 | 16.71 | 0.02 | 0.524 | 3.05 | 2.05 | 3.3 | 96.3 | 0.4 | -1.86 | 0.40 | 0.52 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106032 | 6708 | 24 | 0 | 24 | 0 | 52716 | logfile |
✘ | 8JYM | 36726 | 2024-03-19 | 2023-07-03 | 2.79 | 3.39 | 2.76 | 3.2 | 0.004 | 0.55 | 0.0 | 0.05 | 12.78 | 0.00 | 0.546 | 6.93 | 0.00 | 3.6 | 96.4 | 0.0 | 0.19 | 0.83 | 0.85 | 3.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24924 | 3099 | 12 | 0 | 48 | 0 | 0 | logfile |
✘ | 8CBN | 16546 | 2024-03-16 | 2023-01-25 | 3.34 | 3.92 | 3.27 | 3.7 | 0.008 | 0.72 | 0.0 | 0.04 | 25.79 | 0.01 | 0.876 | 6.35 | 2.28 | 4.8 | 95.2 | 0.0 | -5.72 | 0.71 | 0.78 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13669 | 939 | 12 | 300 | 0 | 0 | 0 | logfile |