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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6NEF | 9357 | 2024-03-21 | 2018-12-17 | 3.4 | 3.55 | — | 3.5 | 0.021 | 1.83 | 0.0 | 0.07 | 16.56 | 0.01 | 1.696 | 41.21 | 0.04 | 24.1 | 72.2 | 3.7 | -6.35 | 0.42 | 0.36 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29457 | 3663 | 9 | 0 | 63 | 0 | 0 | logfile |
✘ | 6JSi | 9882 | 2024-03-12 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✘ | 8D1B | 27121 | 2024-03-11 | 2022-05-27 | 3.57 | 3.85 | 3.45 | 3.8 | 0.006 | 1.09 | 0.0 | 0.05 | 14.42 | 0.01 | 2.084 | 19.71 | 0.28 | 24.1 | 75.9 | 0.0 | -6.32 | 0.76 | 0.81 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6724 | 874 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6WHR | 21673 | 2024-03-19 | 2020-04-08 | 3.99 | 4.51 | — | 4.3 | 0.015 | 1.23 | 0.0 | 0.07 | 17.34 | 0.01 | 1.968 | 30.82 | 2.94 | 21.2 | 78.0 | 0.8 | -5.90 | 0.69 | 0.73 | 1.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23370 | 3166 | 10 | 0 | 14 | 0 | 0 | logfile |
✘ | 5H64 | 6668 | 2024-03-25 | 2016-11-10 | 4.4 | 3.65 | — | 3.4 | 0.011 | 1.57 | 0.0 | 0.07 | 11.97 | 0.01 | 1.144 | 72.33 | 0.80 | 17.3 | 80.2 | 2.4 | -5.94 | 0.74 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45252 | 6430 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6SW9 | 10320 | 2024-03-15 | 2019-09-20 | 4.2 | 5.88 | 4.46 | 3.0 | 0.014 | 1.26 | 0.0 | 0.06 | 23.52 | 0.02 | 1.769 | 31.76 | 0.80 | 19.0 | 80.8 | 0.2 | -5.60 | 0.85 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70661 | 4508 | 47 | 1593 | 41 | 42 | 0 | logfile |
✘ | 6CNB | 7530 | 2024-03-25 | 2018-03-08 | 4.1 | 4.34 | — | 4.2 | 0.007 | 1.15 | 2.0 | 0.06 | 14.17 | 0.01 | 1.836 | 32.34 | 0.60 | 17.4 | 81.2 | 1.4 | -5.08 | 0.73 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 47837 | 5695 | 27 | 112 | 69 | 0 | 0 | logfile |
✘ | 5KPW | 8281 | 2024-03-28 | 2016-07-05 | 3.9 | 5.27 | 4.08 | 3.8 | 0.007 | 1.11 | 5.0 | 0.09 | 22.51 | 0.01 | 2.191 | 24.08 | 0.79 | 12.9 | 81.4 | 5.7 | -4.53 | 0.90 | 0.77 | 0.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 154603 | 6623 | 59 | 4812 | 0 | 0 | 0 | logfile |
✘ | 5GJR | 9512 | 2024-03-20 | 2016-07-01 | 3.5 | 3.65 | — | 3.5 | 0.013 | 1.53 | 38.0 | 0.08 | 16.77 | 0.01 | 1.114 | 63.72 | 11.56 | 13.2 | 81.8 | 5.0 | -4.66 | 0.71 | 0.77 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 142753 | 19945 | 76 | 0 | 12 | 0 | 0 | logfile |
✘ | 5Lii | 4053 | 2024-03-10 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8JVM | 36677 | 2024-03-10 | 2023-06-28 | 3.86 | 4.13 | 3.89 | 3.9 | 0.006 | 1.08 | 1.0 | 0.06 | 14.54 | 0.01 | 2.138 | 27.03 | 1.75 | 16.3 | 82.1 | 1.6 | -3.56 | 0.64 | 0.54 | 0.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3726 | 498 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6XKT | 22224 | 2024-03-15 | 2020-06-27 | 3.75 | 3.88 | — | 3.8 | 0.009 | 0.99 | 1.0 | 0.07 | 13.78 | 0.01 | 1.732 | 26.25 | 0.08 | 16.5 | 83.1 | 0.4 | -4.20 | 0.75 | 0.79 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13079 | 1678 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 6XKU | 22225 | 2024-03-15 | 2020-06-27 | 4.2 | 4.32 | — | 4.2 | 0.009 | 1.00 | 1.0 | 0.07 | 13.80 | 0.01 | 1.987 | 25.66 | 0.16 | 16.5 | 83.2 | 0.4 | -4.29 | 0.75 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13079 | 1678 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 6XP5 | 22284 | 2024-03-18 | 2020-07-08 | 4.2 | 4.73 | — | 4.3 | 0.004 | 0.90 | 0.0 | 0.05 | 14.32 | 0.00 | 2.131 | 14.90 | 0.27 | 15.9 | 83.2 | 0.9 | -5.23 | 0.79 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21065 | 2707 | 15 | 0 | 221 | 0 | 0 | logfile |
✘ | 8GKG | 40183 | 2024-03-17 | 2023-03-18 | 4.38 | 3.94 | 4.39 | 4.9 | 0.002 | 0.54 | 0.0 | 0.04 | 12.43 | 0.00 | 2.293 | 5.72 | 0.00 | 16.3 | 83.5 | 0.2 | -2.00 | 0.45 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17160 | 2700 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6NY2 | 8996 | 2024-03-15 | 2019-02-10 | 3.2 | 3.56 | — | 3.4 | 0.007 | 1.02 | 0.0 | 0.05 | 22.80 | 0.01 | 2.266 | 6.07 | 0.66 | 15.6 | 83.6 | 0.8 | -4.66 | 0.78 | 0.83 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10538 | 794 | 4 | 180 | 121 | 0 | 0 | logfile |
✘ | 7NFD | 12300 | 2024-03-15 | 2021-02-06 | 3.51 | 3.83 | — | 3.8 | 0.009 | 1.02 | 1.0 | 0.05 | 16.11 | 0.00 | 2.071 | 25.27 | 0.37 | 15.9 | 84.0 | 0.1 | -5.50 | 0.62 | 0.81 | 2.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12394 | 1582 | 9 | 0 | 5 | 0 | 0 | logfile |
✘ | 5LMU | 4080 | 2024-03-11 | 2016-08-01 | 4.0 | 4.12 | 4.00 | 4.0 | 0.008 | 1.44 | 43.0 | 0.12 | 27.09 | 0.02 | 1.289 | 21.15 | 25.30 | 12.0 | 84.2 | 3.8 | -2.57 | 0.73 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55195 | 2550 | 29 | 1612 | 82 | 0 | 0 | logfile |
✘ | 7AM2 | 11821 | 2024-03-19 | 2020-10-07 | 3.4 | 3.52 | — | 3.4 | 0.009 | 0.95 | 43.0 | 0.07 | 21.09 | 0.01 | 1.157 | 23.90 | 8.65 | 15.0 | 84.3 | 0.7 | -5.47 | 0.64 | 0.76 | 1.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139523 | 15384 | 80 | 839 | 42 | 0 | 0 | logfile |
✘ | 6KXS | 0782 | 2024-03-19 | 2019-09-12 | 3.4 | 3.50 | — | 3.4 | 0.018 | 1.44 | 0.0 | 0.09 | 15.96 | 0.01 | 2.157 | 9.00 | 3.30 | 15.2 | 84.4 | 0.4 | -4.73 | 0.70 | 0.72 | 2.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22499 | 2869 | 23 | 0 | 12 | 0 | 0 | logfile |