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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7WSF | 32756 | 2024-03-16 | 2022-01-29 | 2.87 | 3.08 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.04 | 11.23 | 0.00 | 2.016 | 6.14 | 3.87 | 2.7 | 97.3 | 0.0 | -0.12 | 0.72 | 0.81 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7170 | 879 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 7D0J | 30536 | 2024-03-15 | 2020-09-10 | 3.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 68860 | 5923 | 56 | 0 | 453 | 0 | 0 | logfile |
✘ | 6SWC | 10322 | 2024-03-15 | 2019-09-20 | 3.3 | 4.36 | 3.31 | 3.3 | 0.013 | 0.96 | 0.0 | 0.05 | 22.24 | 0.02 | 1.823 | 9.66 | 0.13 | 13.4 | 86.6 | 0.0 | -5.19 | 0.83 | 0.72 | 1.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70744 | 4519 | 48 | 1593 | 41 | 42 | 0 | logfile |
✘ | 6GiQ | 0004 | 2024-03-24 | 2018-05-15 | 3.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44120 | 5439 | 42 | 0 | 57 | 0 | 0 | logfile |
✘ | 6YAC | 10746 | 2024-03-23 | 2020-03-12 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38469 | 3332 | 45 | 0 | 243 | 56 | 0 | logfile |
✘ | 6YMY | 10848 | 2024-03-16 | 2020-04-10 | 3.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14612 | 1766 | 19 | 0 | 16 | 0 | 0 | logfile |
✘ | 8F6E | 28881 | 2024-03-15 | 2022-11-16 | 3.8 | 4.02 | 3.70 | 4.0 | 0.003 | 0.55 | 0.0 | 0.04 | 13.52 | 0.00 | 2.060 | 5.75 | 0.00 | 5.4 | 94.2 | 0.4 | -0.77 | 0.72 | 0.75 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10478 | 1366 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 7Z37 | 14472 | 2024-03-16 | 2022-03-01 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7PXG | 13702 | 2024-03-20 | 2021-10-08 | 2.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28664 | 3540 | 8 | 0 | 32 | 0 | 0 | logfile |
✘ | 8DDT | 27341 | 2024-03-22 | 2022-06-18 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32229 | 3872 | 12 | 0 | 81 | 0 | 0 | logfile |
✘ | 6SW9 | 10320 | 2024-03-15 | 2019-09-20 | 4.2 | 5.88 | 4.46 | 3.0 | 0.014 | 1.26 | 0.0 | 0.06 | 23.52 | 0.02 | 1.769 | 31.76 | 0.80 | 19.0 | 80.8 | 0.2 | -5.60 | 0.85 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70661 | 4508 | 47 | 1593 | 41 | 42 | 0 | logfile |
✘ | 7V2Y | 31670 | 2024-03-19 | 2021-08-10 | 3.4 | 3.56 | — | 3.5 | 0.005 | 0.96 | 0.0 | 0.05 | 16.29 | 0.01 | 2.276 | 3.85 | 0.34 | 7.5 | 92.4 | 0.1 | -6.23 | 0.69 | 0.78 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23097 | 2846 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8C0Z | 16376 | 2024-03-16 | 2022-12-19 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15083 | 1972 | 10 | 0 | 17 | 0 | 0 | logfile |
✘ | 6UQK | 20849 | 2024-03-25 | 2019-10-20 | 3.77 | 4.46 | 4.11 | 4.3 | 0.003 | 0.53 | 0.0 | 0.04 | 9.91 | 0.00 | 2.196 | 0.22 | 0.00 | 5.0 | 95.0 | 0.0 | -1.84 | 0.74 | 0.78 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 51567 | 8032 | 8 | 0 | 188 | 0 | 0 | logfile |
✘ | 7CUW | 30475 | 2024-03-14 | 2020-08-25 | 2.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9839 | 1199 | 6 | 0 | 9 | 0 | 0 | logfile |
✘ | 5KPW | 8281 | 2024-03-28 | 2016-07-05 | 3.9 | 5.27 | 4.08 | 3.8 | 0.007 | 1.11 | 5.0 | 0.09 | 22.51 | 0.01 | 2.191 | 24.08 | 0.79 | 12.9 | 81.4 | 5.7 | -4.53 | 0.90 | 0.77 | 0.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 154603 | 6623 | 59 | 4812 | 0 | 0 | 0 | logfile |
✘ | 6YP7 | 10865 | 2024-03-16 | 2020-04-15 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71784 | 7002 | 77 | 0 | 325 | 0 | 0 | logfile |
✘ | 6YMX | 10847 | 2024-03-25 | 2020-04-10 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 47034 | 5759 | 47 | 0 | 38 | 0 | 0 | logfile |
✘ | 8EAR | 27983 | 2024-03-17 | 2022-08-29 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 78512 | 9556 | 8 | 0 | 56 | 0 | 0 | logfile |
✘ | 7SXW | 25508 | 2024-03-19 | 2021-11-24 | 2.85 | 3.59 | — | 2.9 | 0.005 | 0.76 | 0.0 | 0.05 | 12.80 | 0.01 | 2.290 | 2.27 | 0.00 | 2.8 | 97.2 | 0.0 | -0.63 | 0.83 | 0.80 | 2.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25242 | 3120 | 24 | 0 | 60 | 0 | 0 | logfile |