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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8Q99 | 18272 | 2024-03-11 | 2023-08-20 | 2.7 | 2.49 | 2.59 | 2.7 | 0.011 | 1.82 | 0.0 | 0.10 | 11.76 | 0.01 | 2.486 | 0.00 | 0.00 | 2.7 | 97.3 | 0.0 | -2.40 | 0.42 | 0.84 | 5.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6642 | 426 | 6 | 0 | 0 | 0 | 3396 | logfile |
✘ | 6UXB | 20932 | 2024-03-15 | 2019-11-07 | 4.9 | 5.50 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.627 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.74 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6UXA | 20931 | 2024-03-15 | 2019-11-07 | 4.5 | 5.05 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.628 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.71 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7TLD | 25988 | 2024-03-19 | 2022-01-18 | 2.89 | 3.35 | — | 3.3 | 0.013 | 1.80 | 0.0 | 0.09 | 13.31 | 0.01 | 2.524 | 0.07 | 0.94 | 5.2 | 94.6 | 0.2 | -1.25 | 0.33 | 0.48 | 3.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22812 | 2916 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7TLB | 25986 | 2024-03-19 | 2022-01-18 | 3.06 | 3.26 | — | 3.2 | 0.012 | 1.74 | 1.0 | 0.09 | 13.14 | 0.01 | 2.531 | 0.11 | 0.82 | 5.3 | 94.7 | 0.1 | -1.00 | 0.54 | 0.56 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22806 | 2916 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8oUW | 17204 | 2024-03-10 | 2023-04-25 | 3.75 | 3.90 | 3.25 | 3.5 | 0.006 | 0.91 | 0.0 | 0.05 | 14.71 | 0.01 | 2.008 | 0.19 | 0.38 | 2.0 | 98.0 | 0.0 | 0.31 | 0.81 | 0.65 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53754 | 6564 | 25 | 67 | 13 | 0 | 0 | logfile |
✘ | 7TP2 | 26046 | 2024-03-19 | 2022-01-24 | 3.72 | 4.22 | — | 3.7 | 0.014 | 1.76 | 6.0 | 0.10 | 13.20 | 0.01 | 2.529 | 0.21 | 1.32 | 7.2 | 92.4 | 0.4 | -1.34 | 0.85 | 0.84 | 2.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24663 | 3047 | 20 | 0 | 61 | 0 | 0 | logfile |
✘ | 6UQK | 20849 | 2024-03-25 | 2019-10-20 | 3.77 | 4.46 | 4.11 | 4.3 | 0.003 | 0.53 | 0.0 | 0.04 | 9.91 | 0.00 | 2.196 | 0.22 | 0.00 | 5.0 | 95.0 | 0.0 | -1.84 | 0.74 | 0.78 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 51567 | 8032 | 8 | 0 | 188 | 0 | 0 | logfile |
✘ | 7K45 | 22660 | 2024-03-10 | 2020-09-14 | 3.7 | 3.90 | 3.76 | 3.9 | 0.014 | 1.42 | 0.0 | 0.08 | 9.35 | 0.01 | 2.568 | 0.35 | 0.00 | 2.2 | 97.8 | 0.0 | 0.92 | 0.79 | 0.78 | 4.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3038 | 419 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 6oLL | 20116 | 2024-03-18 | 2019-04-16 | 4.1 | 4.59 | — | 4.4 | 0.004 | 1.05 | 0.0 | 0.06 | 6.94 | 0.01 | 2.400 | 0.40 | 0.00 | 2.0 | 97.8 | 0.2 | -0.51 | 0.67 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10426 | 2114 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VFi | 21173 | 2024-03-11 | 2020-01-05 | 4.54 | 4.63 | 4.96 | 4.5 | 0.018 | 1.47 | 0.0 | 0.09 | 10.93 | 0.01 | 2.449 | 0.53 | 0.00 | 1.3 | 98.7 | 0.0 | 1.21 | 0.80 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 58488 | 7560 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 6BNP | 7116 | 2024-03-11 | 2017-11-17 | 4.6 | 4.61 | 3.78 | 4.4 | 0.015 | 2.10 | 24.0 | 0.11 | 16.18 | 0.02 | 1.814 | 0.55 | 1.80 | 8.3 | 90.3 | 1.3 | -3.94 | 0.48 | 0.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56792 | 7160 | 22 | 0 | 16 | 0 | 0 | logfile |
✘ | 6VL6 | 21231 | 2024-03-18 | 2020-01-22 | 4.6 | 5.00 | 4.54 | 4.6 | 0.019 | 1.46 | 0.0 | 0.09 | 11.38 | 0.01 | 2.431 | 0.59 | 0.00 | 0.9 | 99.1 | 0.0 | 0.45 | 0.87 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21504 | 2640 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VL5 | 21230 | 2024-03-16 | 2020-01-22 | 4.5 | 4.57 | 4.20 | 4.4 | 0.019 | 1.72 | 0.0 | 0.10 | 11.99 | 0.01 | 2.242 | 0.64 | 0.20 | 1.2 | 98.8 | 0.0 | 0.88 | 0.79 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15039 | 1719 | 42 | 0 | 105 | 0 | 0 | logfile |
✘ | 7LY2 | 23582 | 2024-03-22 | 2021-03-05 | 2.5 | 2.61 | 2.57 | 2.6 | 0.011 | 1.24 | 3.0 | 0.08 | 11.26 | 0.01 | 2.427 | 0.64 | 0.19 | 1.6 | 98.4 | 0.0 | 0.74 | 0.72 | 0.76 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33444 | 4470 | 27 | 0 | 69 | 0 | 0 | logfile |
✘ | 8FCN | 28987 | 2024-03-23 | 2022-12-01 | 2.95 | 3.93 | 4.11 | 3.5 | 0.010 | 0.82 | 0.0 | 0.06 | 12.73 | 0.00 | 2.403 | 0.65 | 0.11 | 1.2 | 98.7 | 0.1 | 0.17 | 0.76 | 0.64 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35034 | 4446 | 18 | 0 | 12 | 0 | 0 | logfile |
✘ | 6o2P | 0611 | 2024-03-14 | 2019-02-24 | 3.3 | 3.80 | — | 3.8 | 0.014 | 1.83 | 0.0 | 0.64 | 22.92 | 0.00 | 1.908 | 0.66 | 1.16 | 4.5 | 95.5 | 0.0 | -3.17 | 0.51 | 0.72 | 2.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9767 | 1179 | 3 | 0 | 29 | 0 | 0 | logfile |
✘ | 8FCL | 28982 | 2024-03-23 | 2022-12-01 | 3.51 | 3.89 | 3.72 | 3.9 | 0.011 | 0.87 | 0.0 | 0.06 | 12.28 | 0.00 | 2.300 | 0.67 | 0.10 | 1.8 | 98.2 | 0.0 | 0.35 | 0.67 | 0.63 | 1.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36904 | 4667 | 13 | 0 | 12 | 0 | 0 | logfile |
✘ | 7S6J | 24877 | 2024-03-21 | 2021-09-14 | 3.4 | 3.70 | 3.47 | 3.6 | 0.020 | 1.80 | 0.0 | 0.11 | 9.98 | 0.01 | 2.401 | 0.72 | 0.18 | 4.0 | 96.0 | 0.0 | 0.16 | 0.80 | 0.82 | 2.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30795 | 3894 | 21 | 0 | 33 | 0 | 0 | logfile |
✘ | 7LXZ | 23580 | 2024-03-22 | 2021-03-05 | 2.6 | 2.71 | 2.68 | 2.7 | 0.011 | 1.22 | 0.0 | 0.07 | 11.32 | 0.01 | 2.435 | 0.76 | 0.00 | 2.0 | 98.0 | 0.0 | 0.49 | 0.74 | 0.77 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34353 | 4557 | 33 | 0 | 78 | 0 | 0 | logfile |