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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6o7K | 0643 | 2024-03-11 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.010 | 0.91 | 0.0 | 0.05 | 22.81 | 0.01 | 2.040 | 33.34 | 0.04 | 10.7 | 88.8 | 0.5 | -2.23 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 6o9K | 0662 | 2024-03-23 | 2019-03-14 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.96 | — | — | — | 4.0 | 0.007 | 0.92 | 2.0 | 0.04 | 24.18 | 0.01 | 1.729 | 49.48 | 5.60 | 12.2 | 87.1 | 0.7 | -2.94 | — | 0.92 | 0.86 | — | 146597 | 6162 | 55 | 4594 | 0 | 0 | 0 | logfile |
✘ | 7N4E | 24148 | 2024-03-21 | 2021-06-04 | 3.8 | 3.85 | — | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 17.76 | 0.01 | 1.705 | 13.32 | 3.45 | 4.3 | 95.7 | 0.0 | -0.65 | 0.78 | 0.77 | 1.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29822 | 3559 | 10 | 89 | 3 | 0 | 0 | logfile |
✘ | 7XTC | 33446 | 2024-03-17 | 2022-05-16 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16301 | 1038 | 5 | 0 | 2 | 0 | 8097 | logfile |
✘ | 6Mi8 | 9126 | 2024-03-11 | 2018-09-19 | 4.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7139 | 911 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 7E2Z | 30973 | 2024-03-11 | 2021-02-07 | 3.1 | 3.34 | — | 3.4 | 0.009 | 1.05 | 0.0 | 0.22 | 14.20 | 0.01 | 2.160 | 5.36 | 0.00 | 1.6 | 98.4 | 0.0 | 2.35 | 0.57 | 0.74 | 1.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6997 | 870 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 6JEo | 9807 | 2024-03-19 | 2019-02-06 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94576 | 8774 | 88 | 0 | 504 | 0 | 0 | logfile |
✘ | 5GJW | 9515 | 2024-03-18 | 2016-07-02 | 3.9 | 4.02 | — | 4.0 | 0.012 | 1.51 | 20.0 | 0.08 | 12.66 | 0.01 | 1.844 | 12.82 | 1.50 | 12.8 | 85.5 | 1.7 | -5.28 | 0.55 | 0.80 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21561 | 2676 | 14 | 0 | 29 | 0 | 0 | logfile |
✘ | 7oSE | 13048 | 2024-03-16 | 2021-06-08 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14882 | 1816 | 12 | 0 | 10 | 2 | 0 | logfile |
✘ | 7EQ9 | 31256 | 2024-03-12 | 2021-04-30 | 3.3 | 3.70 | 3.42 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 15.65 | 0.00 | 2.267 | 3.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.85 | 0.60 | 0.53 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62520 | 7620 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 6ZKC | 11244 | 2024-03-14 | 2020-06-30 | 3.1 | 3.23 | — | 3.2 | 0.008 | 1.02 | 0.0 | 1.02 | 12.40 | 0.01 | 2.216 | 5.53 | 0.10 | 4.2 | 95.8 | 0.0 | -3.11 | 0.66 | 0.83 | 3.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 67967 | 8227 | 71 | 0 | 45 | 0 | 0 | logfile |
✘ | 7XTA | 33444 | 2024-03-17 | 2022-05-16 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17478 | 1115 | 5 | 0 | 1 | 0 | 8707 | logfile |
✘ | 8BX5 | 16308 | 2024-03-15 | 2022-12-07 | 4.2 | 4.41 | 4.00 | 4.3 | 0.003 | 0.78 | 1.0 | 0.06 | 14.22 | 0.01 | 2.218 | 14.11 | 0.63 | 3.9 | 96.1 | 0.0 | -0.69 | 0.60 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12527 | 1630 | 13 | 0 | 4 | 4 | 0 | logfile |
✘ | 6VYH | 21460 | 2024-03-10 | 2020-02-26 | 3.0 | 3.13 | — | 3.1 | 0.013 | 1.11 | 1.0 | 0.06 | 14.40 | 0.01 | 1.922 | 11.42 | 2.00 | 8.8 | 90.0 | 1.2 | -4.54 | 0.66 | 0.81 | 2.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6093 | 860 | 5 | 0 | 2 | 1 | 0 | logfile |
✘ | 7XT9 | 33443 | 2024-03-16 | 2022-05-16 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14875 | 927 | 4 | 0 | 7 | 0 | 7351 | logfile |
✘ | 6A96 | 6998 | 2024-03-17 | 2018-07-11 | 3.51 | 4.46 | — | 4.3 | 0.008 | 1.02 | 0.0 | 0.06 | 16.06 | 0.01 | 2.158 | 6.24 | 0.22 | 7.3 | 92.7 | 0.0 | -3.71 | 0.74 | 0.77 | 1.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17049 | 2043 | 19 | 0 | 44 | 0 | 0 | logfile |
✘ | 5GJV | 9513 | 2024-03-18 | 2016-07-02 | 3.6 | 3.69 | — | 3.7 | 0.013 | 1.62 | 32.0 | 0.08 | 15.74 | 0.01 | 1.695 | 18.01 | 4.57 | 11.6 | 86.4 | 2.0 | -5.08 | 0.54 | 0.79 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21904 | 2661 | 14 | 0 | 43 | 0 | 0 | logfile |
✘ | 6A69 | 6987 | 2024-03-11 | 2018-06-27 | 4.11 | 4.21 | — | 4.1 | 0.011 | 1.48 | 0.0 | 0.07 | 11.87 | 0.01 | 2.275 | 7.51 | 1.81 | 13.5 | 86.4 | 0.1 | -4.69 | 0.61 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7851 | 1038 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 6ACH | 9592 | 2024-03-19 | 2018-07-26 | 3.2 | 3.31 | — | 3.3 | 0.016 | 1.36 | 0.0 | 0.07 | 13.31 | 0.01 | 2.261 | 2.79 | 1.03 | 7.2 | 92.8 | 0.0 | -3.92 | 0.74 | 0.81 | 4.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23240 | 2912 | 16 | 0 | 8 | 0 | 0 | logfile |
✘ | 7MDY | 23784 | 2024-03-18 | 2021-04-06 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19595 | 1263 | 6 | 0 | 4 | 0 | 9862 | logfile |