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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7DFL | 30665 | 2024-03-14 | 2020-11-09 | 3.3 | 4.03 | — | 3.9 | 0.008 | 0.95 | 0.0 | 0.06 | 11.97 | 0.01 | 1.910 | 9.78 | 0.00 | 6.1 | 93.9 | 0.0 | -0.96 | 0.63 | 0.75 | 2.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8987 | 1133 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 6PB1 | 20285 | 2024-03-11 | 2019-06-12 | 2.8 | 3.39 | — | 3.4 | 0.003 | 0.79 | 0.0 | 0.06 | 9.37 | 0.01 | 2.288 | 4.32 | 0.00 | 1.9 | 98.1 | 0.0 | -2.93 | 0.56 | 0.75 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8785 | 1069 | 7 | 0 | 9 | 0 | 0 | logfile |
✘ | 6ZKU | 11262 | 2024-03-13 | 2020-06-30 | 3.0 | 2.73 | — | 2.9 | 0.009 | 1.03 | 0.0 | 1.04 | 12.30 | 0.01 | 2.218 | 4.96 | 0.06 | 4.1 | 95.9 | 0.0 | -2.98 | 0.62 | 0.82 | 3.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65505 | 7966 | 69 | 0 | 36 | 0 | 0 | logfile |
✘ | 7R7T | 24304 | 2024-03-23 | 2021-06-25 | 4.5 | 4.85 | — | 4.6 | 0.004 | 1.02 | 0.0 | 0.06 | 15.88 | 0.01 | 2.286 | 6.32 | 0.00 | 7.8 | 92.2 | 0.0 | -3.13 | 0.81 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35351 | 4470 | 13 | 0 | 12 | 0 | 0 | logfile |
✘ | 8AXN | 15702 | 2024-03-19 | 2022-08-31 | 3.34 | 3.51 | 3.30 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 9.93 | 0.00 | 2.125 | 6.78 | 3.52 | 5.4 | 94.6 | 0.0 | -0.25 | 0.76 | 0.84 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94656 | 11704 | 64 | 0 | 0 | 0 | 0 | logfile |
✘ | 7E2Z | 30973 | 2024-03-11 | 2021-02-07 | 3.1 | 3.34 | — | 3.4 | 0.009 | 1.05 | 0.0 | 0.22 | 14.20 | 0.01 | 2.160 | 5.36 | 0.00 | 1.6 | 98.4 | 0.0 | 2.35 | 0.57 | 0.74 | 1.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6997 | 870 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 6ACH | 9592 | 2024-03-19 | 2018-07-26 | 3.2 | 3.31 | — | 3.3 | 0.016 | 1.36 | 0.0 | 0.07 | 13.31 | 0.01 | 2.261 | 2.79 | 1.03 | 7.2 | 92.8 | 0.0 | -3.92 | 0.74 | 0.81 | 4.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23240 | 2912 | 16 | 0 | 8 | 0 | 0 | logfile |
✘ | 6XWR | 10636 | 2024-03-14 | 2020-01-24 | 3.22 | 3.96 | — | 3.7 | 0.008 | 0.75 | 0.0 | 0.05 | 12.81 | 0.00 | 2.122 | 11.13 | 0.00 | 5.7 | 94.3 | 0.0 | -2.71 | 0.74 | 0.85 | 2.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9564 | 1278 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EP0 | 28494 | 2024-03-19 | 2022-10-04 | 4.9 | 6.49 | 5.04 | 5.3 | 0.004 | 0.79 | 0.0 | 0.05 | 12.19 | 0.01 | 2.237 | 11.79 | 0.00 | 3.6 | 96.4 | 0.0 | 0.06 | 0.70 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24408 | 3372 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7AKJ | 11813 | 2024-03-22 | 2020-10-01 | 3.8 | 3.63 | — | 3.6 | 0.005 | 0.89 | 0.0 | 0.07 | 16.70 | 0.01 | 2.143 | 6.11 | 0.09 | 2.9 | 97.1 | 0.0 | -1.03 | 0.79 | 0.79 | 2.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31812 | 3930 | 30 | 0 | 96 | 0 | 0 | logfile |
✘ | 6ZKC | 11244 | 2024-03-14 | 2020-06-30 | 3.1 | 3.23 | — | 3.2 | 0.008 | 1.02 | 0.0 | 1.02 | 12.40 | 0.01 | 2.216 | 5.53 | 0.10 | 4.2 | 95.8 | 0.0 | -3.11 | 0.66 | 0.83 | 3.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 67967 | 8227 | 71 | 0 | 45 | 0 | 0 | logfile |
✘ | 7EQ9 | 31256 | 2024-03-12 | 2021-04-30 | 3.3 | 3.70 | 3.42 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 15.65 | 0.00 | 2.267 | 3.70 | 0.00 | 3.3 | 96.7 | 0.0 | 1.85 | 0.60 | 0.53 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62520 | 7620 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BX5 | 16308 | 2024-03-15 | 2022-12-07 | 4.2 | 4.41 | 4.00 | 4.3 | 0.003 | 0.78 | 1.0 | 0.06 | 14.22 | 0.01 | 2.218 | 14.11 | 0.63 | 3.9 | 96.1 | 0.0 | -0.69 | 0.60 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12527 | 1630 | 13 | 0 | 4 | 4 | 0 | logfile |
✘ | 6VL5 | 21230 | 2024-03-16 | 2020-01-22 | 4.5 | 4.57 | 4.20 | 4.4 | 0.019 | 1.72 | 0.0 | 0.10 | 11.99 | 0.01 | 2.242 | 0.64 | 0.20 | 1.2 | 98.8 | 0.0 | 0.88 | 0.79 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15039 | 1719 | 42 | 0 | 105 | 0 | 0 | logfile |
✘ | 8ALZ | 15521 | 2024-03-17 | 2022-08-01 | 3.4 | 4.20 | 3.41 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 16.77 | 0.01 | 2.204 | 15.40 | 0.39 | 4.5 | 95.4 | 0.0 | -0.91 | 0.90 | 0.78 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16409 | 2041 | 3 | 0 | 2 | 0 | 0 | logfile |
✘ | 7N4E | 24148 | 2024-03-21 | 2021-06-04 | 3.8 | 3.85 | — | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 17.76 | 0.01 | 1.705 | 13.32 | 3.45 | 4.3 | 95.7 | 0.0 | -0.65 | 0.78 | 0.77 | 1.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29822 | 3559 | 10 | 89 | 3 | 0 | 0 | logfile |
✘ | 7WSi | 32759 | 2024-03-10 | 2022-01-29 | 3.32 | 3.90 | — | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 12.25 | 0.00 | 2.122 | 8.82 | 0.00 | 7.9 | 92.1 | 0.0 | -0.23 | 0.66 | 0.77 | 1.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5701 | 743 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6A96 | 6998 | 2024-03-17 | 2018-07-11 | 3.51 | 4.46 | — | 4.3 | 0.008 | 1.02 | 0.0 | 0.06 | 16.06 | 0.01 | 2.158 | 6.24 | 0.22 | 7.3 | 92.7 | 0.0 | -3.71 | 0.74 | 0.77 | 1.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17049 | 2043 | 19 | 0 | 44 | 0 | 0 | logfile |
✘ | 7DFZ | 30668 | 2024-03-11 | 2020-11-10 | 3.58 | 3.82 | — | 3.8 | 0.010 | 0.99 | 0.0 | 0.06 | 15.65 | 0.03 | 2.157 | 18.62 | 0.00 | 7.1 | 92.9 | 0.0 | -3.56 | 0.63 | 0.80 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7412 | 897 | 7 | 0 | 24 | 0 | 0 | logfile |
✘ | 7N0B | 24102 | 2024-03-10 | 2021-05-25 | 3.9 | 4.21 | — | 4.2 | 0.006 | 1.10 | 1.0 | 0.06 | 16.97 | 0.01 | 1.921 | 8.42 | 0.36 | 1.9 | 98.1 | 0.0 | -3.60 | 0.73 | 0.76 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5875 | 643 | 7 | 39 | 7 | 1 | 0 | logfile |