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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8J5A | 35984 | 2024-03-19 | 2023-04-21 | 1.19 | 1.12 | 1.22 | 1.2 | 0.014 | 1.48 | 0.0 | 0.08 | 13.93 | 0.01 | 1.560 | 8.49 | 3.21 | 0.6 | 99.4 | 0.0 | 3.37 | 0.51 | 0.66 | 8.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56208 | 4128 | 24 | 0 | 24 | 3384 | 17040 | logfile |
✘ | 7BiN | 12192 | 2024-03-18 | 2021-01-12 | 3.2 | 1.68 | 3.08 | 3.1 | 0.010 | 0.90 | 0.0 | 0.05 | 15.16 | 0.01 | 1.043 | 16.06 | 0.04 | 9.8 | 90.1 | 0.1 | -0.58 | 0.53 | 0.67 | 1.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 81721 | 10887 | 56 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CAN | 16531 | 2024-03-15 | 2023-01-24 | 1.93 | 1.75 | 1.93 | 1.9 | 0.002 | 0.40 | 0.0 | 0.04 | 9.00 | 0.00 | 2.041 | 2.66 | 0.16 | 0.9 | 99.1 | 0.0 | 1.63 | 0.70 | 0.81 | 6.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71225 | 4104 | 21 | 0 | 27 | 3170 | 33930 | logfile |
✘ | 7EFD | 31084 | 2024-03-10 | 2021-03-21 | 1.77 | 1.78 | 1.82 | 1.9 | 0.033 | 3.16 | 12.0 | 0.09 | 15.32 | 0.02 | 0.001 | 1.61 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.74 | 0.82 | 5.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✘ | 7R4X | 14317 | 2024-03-17 | 2022-02-09 | 2.15 | 1.94 | — | 2.1 | 0.013 | 1.22 | 0.0 | 0.06 | 22.83 | 0.02 | 1.723 | 4.90 | 4.12 | 3.8 | 96.2 | 0.1 | -0.66 | 0.70 | 0.73 | 4.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 77936 | 4792 | 77 | 1646 | 174 | 4117 | 0 | logfile |
✘ | 8CS9 | 26960 | 2024-03-12 | 2022-05-12 | 2.74 | 1.95 | — | 1.6 | 0.006 | 0.85 | 0.0 | 0.05 | 18.63 | 0.01 | 2.218 | 10.20 | 3.66 | 2.2 | 97.5 | 0.3 | 0.33 | 0.82 | 0.81 | 3.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60944 | 7677 | 39 | 0 | 27 | 268 | 0 | logfile |
✘ | 8BQV | 16188 | 2024-03-11 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✘ | 8G6X | 29787 | 2024-03-19 | 2023-02-16 | 2.31 | 1.96 | 2.20 | 2.0 | 0.011 | 0.97 | 0.0 | 0.06 | 23.48 | 0.02 | 1.474 | 7.58 | 5.85 | 4.1 | 95.8 | 0.2 | -2.02 | 0.68 | 0.83 | 5.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93873 | 3177 | 72 | 3037 | 252 | 3462 | 0 | logfile |
✘ | 8AG4 | 15415 | 2024-03-15 | 2022-07-19 | 2.46 | 2.04 | 2.48 | 1.7 | 0.003 | 0.49 | 0.0 | 0.04 | 13.59 | 0.00 | 2.170 | 5.34 | 0.00 | 3.9 | 96.1 | 0.0 | 0.77 | 0.82 | 0.83 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11155 | 1384 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EA0 | 27970 | 2024-03-10 | 2022-08-27 | 2.56 | 2.05 | 2.66 | 1.9 | 0.003 | 0.55 | 0.0 | 0.04 | 13.66 | 0.00 | 2.237 | 8.88 | 0.00 | 4.3 | 95.7 | 0.0 | -0.24 | 0.72 | 0.77 | 2.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2286 | 285 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 8P2S | 17373 | 2024-03-14 | 2023-05-16 | 2.4 | 2.06 | 2.43 | 1.8 | 0.003 | 0.54 | 0.0 | 0.04 | 12.82 | 0.00 | 2.120 | 8.76 | 3.01 | 4.7 | 95.2 | 0.1 | 0.29 | 0.79 | 0.75 | 4.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9694 | 1201 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 8DBi | 27285 | 2024-03-16 | 2022-06-14 | 2.0 | 2.07 | 2.03 | 2.0 | 0.012 | 1.17 | 0.0 | 0.06 | 18.16 | 0.04 | 1.910 | 5.92 | 1.15 | 4.3 | 95.7 | 0.0 | 0.57 | 0.73 | 0.87 | 6.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14496 | 1854 | 18 | 0 | 30 | 12 | 0 | logfile |
✘ | 7TBG | 25798 | 2024-03-20 | 2021-12-22 | 2.5 | 2.10 | 2.44 | 1.8 | 0.006 | 0.76 | 0.0 | 0.05 | 13.03 | 0.01 | 2.268 | 1.89 | 0.57 | 3.2 | 96.8 | 0.0 | 0.60 | 0.75 | 0.79 | 4.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19679 | 1190 | 6 | 0 | 5 | 20 | 9858 | logfile |
✘ | 6SAG | 10130 | 2024-03-10 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 13.90 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✘ | 8BQW | 16189 | 2024-03-17 | 2023-01-18 | 2.3 | 2.12 | 2.14 | 2.2 | 0.008 | 1.14 | 0.0 | 0.07 | 8.96 | 0.00 | 0.052 | 12.77 | 0.00 | 9.6 | 90.4 | 0.0 | -3.78 | 0.46 | 0.75 | 7.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17385 | 2310 | 90 | 0 | 270 | 135 | 0 | logfile |
✘ | 7Y7D | 33661 | 2024-03-20 | 2022-06-22 | 2.58 | 2.12 | 2.57 | 2.5 | 0.010 | 0.77 | 0.0 | 0.05 | 22.54 | 0.02 | 1.795 | 7.63 | 0.00 | 4.0 | 95.9 | 0.1 | -0.60 | 0.52 | 0.76 | 3.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 141917 | 5591 | 63 | 4557 | 260 | 0 | 0 | logfile |
✘ | 7S8o | 24899 | 2024-03-11 | 2021-09-18 | 2.58 | 2.12 | 2.59 | 1.9 | 0.007 | 0.72 | 0.0 | 0.05 | 13.52 | 0.00 | 2.102 | 3.18 | 0.00 | 5.8 | 94.2 | 0.0 | 0.31 | 0.81 | 0.80 | 4.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8331 | 1101 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 6RW4 | 10021 | 2024-03-15 | 2019-06-03 | 2.97 | 2.14 | 2.98 | 2.8 | 0.008 | 0.67 | 0.0 | 0.08 | 18.29 | 0.01 | 1.650 | 2.42 | 0.06 | 3.0 | 97.0 | 0.1 | -2.57 | 0.85 | 0.84 | 4.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 128080 | 5920 | 47 | 955 | 85 | 59 | 59211 | logfile |
✘ | 7M3N | 23658 | 2024-03-10 | 2021-03-18 | 2.4 | 2.15 | 2.40 | 1.9 | 0.005 | 0.63 | 0.0 | 0.04 | 15.95 | 0.00 | 2.168 | 5.79 | 4.28 | 4.3 | 95.6 | 0.1 | -2.53 | 0.43 | 0.82 | 4.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6004 | 759 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8DZQ | 27805 | 2024-03-11 | 2022-08-08 | 2.82 | 2.18 | 2.79 | 2.1 | 0.019 | 0.79 | 0.0 | 0.11 | 13.38 | 0.00 | 2.244 | 6.40 | 0.23 | 6.2 | 93.8 | 0.0 | -0.46 | 0.74 | 0.71 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8342 | 1100 | 5 | 0 | 1 | 0 | 0 | logfile |