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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7K57 | 22676 | 2024-03-15 | 2020-09-16 | 3.7 | 4.17 | 3.78 | 4.0 | 0.007 | 1.03 | 0.0 | 0.06 | 15.81 | 0.01 | 2.107 | 6.10 | 0.94 | 5.9 | 94.1 | 0.0 | -4.46 | 0.85 | 0.83 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70104 | 8892 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6NR3 | 0488 | 2024-03-19 | 2019-01-22 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25180 | 3232 | 8 | 0 | 196 | 0 | 0 | logfile |
✘ | 7EJ8 | 31156 | 2024-03-11 | 2021-04-01 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8647 | 1100 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7ZDW | 14675 | 2024-03-14 | 2022-03-29 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9039 | 1159 | 2 | 0 | 3 | 0 | 0 | logfile |
✘ | 6CNA | 7529 | 2024-03-18 | 2018-03-07 | 4.6 | 5.89 | — | 5.8 | 0.007 | 0.93 | 0.0 | 0.05 | 13.75 | 0.01 | 2.021 | 26.55 | 0.00 | 9.7 | 90.1 | 0.3 | -4.80 | 0.57 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21426 | 3160 | 14 | 0 | 22 | 0 | 0 | logfile |
✘ | 6oo3 | 20143 | 2024-03-17 | 2019-04-22 | 2.9 | 3.02 | 2.79 | 3.0 | 0.014 | 1.22 | 0.0 | 0.06 | 10.95 | 0.01 | 2.495 | 2.15 | 0.00 | 3.1 | 96.9 | 0.0 | -2.84 | 0.68 | 0.85 | 4.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18236 | 2404 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6NY2 | 8996 | 2024-03-15 | 2019-02-10 | 3.2 | 3.56 | — | 3.4 | 0.007 | 1.02 | 0.0 | 0.05 | 22.80 | 0.01 | 2.266 | 6.07 | 0.66 | 15.6 | 83.6 | 0.8 | -4.66 | 0.78 | 0.83 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10538 | 794 | 4 | 180 | 121 | 0 | 0 | logfile |
✘ | 8DW3 | 27750 | 2024-03-14 | 2022-07-30 | 4.26 | 4.66 | 4.43 | 4.4 | 0.013 | 0.95 | 0.0 | 0.05 | 17.59 | 0.01 | 1.895 | 15.23 | 0.10 | 5.7 | 94.2 | 0.1 | -0.89 | 0.75 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9351 | 1223 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 7WGV | 32490 | 2024-03-20 | 2021-12-29 | 3.2 | 3.63 | — | 3.6 | 0.017 | 1.29 | 0.0 | 0.05 | 14.42 | 0.00 | 2.151 | 5.03 | 0.00 | 3.2 | 96.8 | 0.0 | -0.59 | 0.79 | 0.83 | 3.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26931 | 3309 | 21 | 0 | 69 | 0 | 0 | logfile |
✘ | 7oFQ | 12875 | 2024-03-17 | 2021-05-05 | 3.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 80691 | 9493 | 90 | 0 | 849 | 0 | 0 | logfile |
✘ | 7T6M | 25719 | 2024-03-18 | 2021-12-14 | 2.8 | 3.05 | — | 3.1 | 0.006 | 1.07 | 0.0 | 0.07 | 15.21 | 0.01 | 2.300 | 3.31 | 0.00 | 1.7 | 98.3 | 0.0 | -2.68 | 0.71 | 0.84 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19600 | 2424 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6WHR | 21673 | 2024-03-19 | 2020-04-08 | 3.99 | 4.51 | — | 4.3 | 0.015 | 1.23 | 0.0 | 0.07 | 17.34 | 0.01 | 1.968 | 30.82 | 2.94 | 21.2 | 78.0 | 0.8 | -5.90 | 0.69 | 0.73 | 1.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23370 | 3166 | 10 | 0 | 14 | 0 | 0 | logfile |
✘ | 6CT0 | 7610 | 2024-03-10 | 2018-03-21 | 3.1 | 3.17 | — | 3.2 | 0.010 | 1.57 | 0.0 | 0.07 | 17.75 | 0.01 | 2.273 | 14.28 | 17.87 | 2.7 | 97.3 | 0.0 | -2.00 | 0.74 | 0.86 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105600 | 13740 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 7W77 | 32341 | 2024-03-15 | 2021-12-03 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12051 | 1424 | 7 | 0 | 30 | 0 | 0 | logfile |
✘ | 6WHG | 21672 | 2024-03-17 | 2020-04-08 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17116 | 2092 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 7XJ3 | 33218 | 2024-03-17 | 2022-04-14 | 3.54 | 3.75 | 3.55 | 3.7 | 0.019 | 1.03 | 0.0 | 0.04 | 16.43 | 0.01 | 2.242 | 12.56 | 6.79 | 8.8 | 91.2 | 0.0 | -3.52 | 0.69 | 0.84 | 1.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18493 | 2428 | 8 | 0 | 14 | 0 | 0 | logfile |
✘ | 6VVZ | 21408 | 2024-03-21 | 2020-02-18 | 3.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29860 | 3508 | 12 | 127 | 4 | 0 | 0 | logfile |
✘ | 6V3H | 21037 | 2024-03-14 | 2019-11-25 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9926 | 1232 | 8 | 0 | 21 | 0 | 0 | logfile |
✘ | 6oo4 | 20145 | 2024-03-17 | 2019-04-22 | 3.3 | 3.45 | 3.23 | 3.5 | 0.013 | 1.10 | 0.0 | 0.06 | 10.41 | 0.01 | 1.858 | 2.96 | 0.00 | 3.4 | 96.6 | 0.0 | -2.86 | 0.47 | 0.64 | 4.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18452 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 7VC4 | 31888 | 2024-03-17 | 2021-09-01 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16311 | 1046 | 10 | 0 | 0 | 0 | 8079 | logfile |