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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6MiX | 9132 | 2023-07-18 | 2018-09-20 | 3.6 | 4.57 | — | 14.0 | 0.007 | 1.19 | 0.0 | 0.07 | 16.40 | 0.01 | 2.212 | 9.79 | 2.30 | 14.6 | 85.0 | 0.4 | -5.69 | -0.03 | 0.00 | 0.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43120 | 5348 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2023-07-11 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 6RBE | 4795 | 2023-07-11 | 2019-04-10 | 3.8 | 3.81 | 4.03 | 5.1 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.38 | 0.09 | 0.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 5WVE | 6690 | 2023-07-13 | 2016-12-24 | 4.4 | 4.90 | — | 5.1 | 0.008 | 1.34 | 7.0 | 0.08 | 19.34 | 0.01 | 1.493 | 69.05 | 16.86 | 7.1 | 89.5 | 3.4 | -0.75 | 0.49 | 0.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 78605 | 9766 | 39 | 0 | 21 | 0 | 0 | logfile |
✘ | 6MN7 | 9166 | 2023-07-10 | 2018-10-01 | 4.8 | 5.01 | — | 5.0 | 0.016 | 2.23 | 12.0 | 0.12 | 10.62 | 0.02 | 1.395 | 35.74 | 0.57 | 8.6 | 89.4 | 2.0 | -2.34 | 0.50 | 0.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21447 | 2418 | 66 | 0 | 192 | 0 | 0 | logfile |
✘ | 7ZNL | 14808 | 2023-07-14 | 2022-04-21 | 3.45 | 3.67 | 3.55 | 3.4 | 0.005 | 0.78 | 0.0 | 0.04 | 11.78 | 0.01 | 2.171 | 7.60 | 6.04 | 6.6 | 93.1 | 0.3 | -2.22 | 0.37 | 0.21 | 0.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 84821 | 11173 | 28 | 0 | 0 | 0 | 0 | logfile |
✘ | 7JMH | 22394 | 2023-07-08 | 2020-07-31 | 4.5 | 5.68 | — | 4.4 | 0.005 | 1.02 | 0.0 | 0.05 | 10.48 | 0.01 | 1.373 | 9.43 | 0.46 | 11.7 | 88.2 | 0.1 | -4.60 | 0.56 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 7JMJ | 22396 | 2023-07-08 | 2020-07-31 | 4.5 | 5.51 | — | 4.3 | 0.007 | 1.08 | 0.0 | 0.05 | 10.58 | 0.01 | 1.373 | 9.90 | 0.62 | 11.3 | 88.5 | 0.3 | -4.67 | 0.56 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 5UCY | 8539 | 2023-07-11 | 2016-12-22 | 4.6 | 4.99 | — | 4.6 | 0.011 | 1.21 | 3.0 | 0.06 | 13.21 | 0.01 | 0.244 | 89.25 | 0.68 | 11.3 | 88.3 | 0.5 | -4.47 | 0.50 | 0.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24990 | 2610 | 12 | 3 | 6 | 0 | 4452 | logfile |
✘ | 7JMG | 22393 | 2023-07-08 | 2020-07-31 | 4.5 | 7.15 | — | 4.3 | 0.005 | 0.93 | 0.0 | 0.05 | 9.82 | 0.01 | 1.373 | 7.38 | 0.27 | 10.3 | 89.6 | 0.1 | -4.77 | 0.57 | 0.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 7EDX | 31075 | 2023-07-14 | 2021-03-17 | 4.5 | 4.87 | — | 4.1 | 0.008 | 1.09 | 34.0 | 0.07 | 16.62 | 0.01 | 1.497 | 20.97 | 3.31 | 6.1 | 93.4 | 0.5 | -3.70 | 0.67 | 0.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 81790 | 9837 | 46 | 154 | 10 | 0 | 0 | logfile |
✘ | 7Pii | 13437 | 2023-07-06 | 2021-08-19 | 2.68 | 2.39 | — | 2.7 | 0.010 | 0.78 | 0.0 | 0.05 | 28.29 | 0.00 | 2.229 | 8.23 | 0.31 | 4.0 | 96.0 | 0.0 | -0.89 | 0.51 | 0.38 | 3.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11192 | 779 | 12 | 245 | 0 | 0 | 0 | logfile |
✘ | 6PV6 | 20486 | 2023-07-08 | 2019-07-19 | 4.5 | 5.79 | — | 3.8 | 0.006 | 1.04 | 0.0 | 0.05 | 10.65 | 0.01 | 1.373 | 9.47 | 0.31 | 11.0 | 88.9 | 0.1 | -4.72 | 0.60 | 0.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 7CQ7 | 30438 | 2023-07-07 | 2020-08-08 | 3.55 | 3.95 | — | 4.0 | 0.008 | 1.07 | 0.0 | 0.06 | 10.33 | 0.01 | 1.915 | 5.84 | 0.07 | 9.3 | 90.7 | 0.0 | -4.47 | 0.39 | 0.42 | 0.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13810 | 1766 | 8 | 0 | 9 | 0 | 0 | logfile |
✘ | 6KN8 | 0729 | 2023-07-05 | 2019-08-03 | 4.8 | 8.89 | — | 8.4 | 0.019 | 1.81 | 10.0 | 0.10 | 12.39 | 0.01 | 2.211 | 9.21 | 0.41 | 2.0 | 97.4 | 0.5 | -0.24 | 0.74 | 0.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60966 | 7669 | 44 | 0 | 15 | 0 | 0 | logfile |
✘ | 5ZWM | 6972 | 2023-07-05 | 2018-05-16 | 3.4 | 3.37 | — | 3.3 | 0.007 | 1.15 | 10.0 | 0.06 | 12.54 | 0.01 | 1.786 | 18.95 | 0.72 | 5.9 | 93.5 | 0.6 | -3.22 | 0.51 | 0.43 | 1.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111041 | 12858 | 61 | 634 | 8 | 0 | 0 | logfile |
✘ | 6TM2 | 10517 | 2023-07-04 | 2019-12-03 | 2.95 | 3.12 | — | 3.1 | 0.008 | 1.01 | 0.0 | 0.06 | 9.31 | 0.01 | 2.181 | 3.02 | 0.10 | 11.3 | 88.7 | 0.0 | -4.14 | 0.44 | 0.47 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55254 | 7230 | 60 | 0 | 54 | 138 | 0 | logfile |
✘ | 7DK4 | 30702 | 2023-07-16 | 2020-11-23 | 3.8 | 3.20 | — | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 7.92 | 0.00 | 2.106 | 1.33 | 0.15 | 2.8 | 97.2 | 0.0 | -3.26 | 0.58 | 0.47 | 1.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34707 | 4470 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 6TM5 | 10518 | 2023-07-06 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.83 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |
✘ | 5GAQ | 8015 | 2023-07-10 | 2016-01-05 | 3.1 | 3.36 | — | 3.2 | 0.006 | 1.02 | 0.0 | 0.08 | 11.97 | 0.00 | 2.289 | 1.94 | 0.80 | 7.3 | 92.7 | 0.0 | -3.69 | 0.56 | 0.50 | 3.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20574 | 2592 | 9 | 0 | 0 | 0 | 0 | logfile |