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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6o7K | 0643 | 2023-07-04 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.3 | 0.004 | 0.69 | 0.0 | 0.04 | 15.44 | 0.00 | 2.073 | 20.70 | 0.00 | 8.3 | 91.3 | 0.4 | -1.56 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 6o9K | 0662 | 2023-07-21 | 2019-03-14 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.96 | — | — | — | 4.0 | 0.004 | 0.74 | 0.0 | 0.04 | 16.90 | 0.01 | 2.050 | 28.53 | 1.02 | 10.2 | 89.2 | 0.6 | -2.50 | — | 0.92 | 0.85 | — | 146597 | 6162 | 55 | 4594 | 0 | 0 | 0 | logfile |
✘ | 7NNL | 12478 | 2023-07-06 | 2021-02-25 | 3.1 | 3.27 | 3.06 | 3.2 | 0.006 | 0.91 | 0.0 | 0.05 | 15.46 | 0.01 | 2.230 | 6.05 | 0.00 | 3.7 | 96.3 | 0.0 | -1.05 | 0.70 | 0.85 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11099 | 1456 | 6 | 0 | 13 | 0 | 0 | logfile |
✘ | 7NG8 | 12309 | 2023-07-09 | 2021-02-08 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20173 | 1341 | 4 | 0 | 0 | 0 | 9979 | logfile |
✘ | 7oE7 | 12861 | 2023-07-06 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 7AR8 | 11876 | 2023-07-05 | 2020-10-23 | 3.53 | 3.65 | 3.41 | 3.6 | 0.004 | 0.73 | 0.0 | 0.07 | 14.85 | 0.00 | 2.002 | 12.79 | 0.03 | 7.3 | 92.7 | 0.0 | -0.59 | 0.78 | 0.83 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 61461 | 7676 | 64 | 0 | 55 | 0 | 0 | logfile |
✘ | 6oVH | 20212 | 2023-07-05 | 2019-05-07 | 2.6 | 2.81 | 2.71 | 2.8 | 0.014 | 1.10 | 0.0 | 0.04 | 17.48 | 0.01 | 1.203 | 1.15 | 4.55 | 1.0 | 99.0 | 0.0 | -6.34 | 0.75 | 0.87 | 4.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10895 | 1272 | 36 | 0 | 68 | 171 | 0 | logfile |
✘ | 8F2S | 28826 | 2023-07-08 | 2022-11-08 | 2.9 | 3.73 | 2.80 | 3.3 | 0.015 | 0.82 | 0.0 | 0.18 | 15.95 | 0.00 | 2.129 | 3.82 | 0.00 | 4.3 | 95.7 | 0.0 | 0.98 | 0.81 | 0.89 | 4.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17158 | 2023 | 15 | 0 | 38 | 0 | 0 | logfile |
✘ | 7VoY | 32062 | 2023-07-10 | 2021-10-15 | 4.2 | 3.14 | — | 3.1 | 0.009 | 0.97 | 0.0 | 0.10 | 14.41 | 0.01 | 2.056 | 16.17 | 1.25 | 4.6 | 95.4 | 0.0 | 0.99 | 0.45 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22119 | 2479 | 71 | 0 | 44 | 0 | 0 | logfile |
✘ | 6CNF | 7533 | 2023-07-19 | 2018-03-08 | 4.5 | 4.70 | — | 4.4 | 0.006 | 1.16 | 9.0 | 0.06 | 13.86 | 0.01 | 1.905 | 40.19 | 0.74 | 17.9 | 80.5 | 1.6 | -5.23 | 0.74 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 47675 | 5695 | 27 | 104 | 69 | 0 | 0 | logfile |
✘ | 6NT4 | 0501 | 2023-07-06 | 2019-01-28 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11924 | 1406 | 5 | 0 | 20 | 0 | 0 | logfile |
✘ | 6NT3 | 0500 | 2023-07-05 | 2019-01-28 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10934 | 1278 | 5 | 0 | 20 | 0 | 0 | logfile |
✘ | 6M5R | 30090 | 2023-07-06 | 2020-03-11 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -3.65 | — | — | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11055 | 1440 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 7PD3 | 13329 | 2023-07-03 | 2021-08-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108076 | 9276 | 76 | 1522 | 125 | 0 | 0 | logfile |
✘ | 7SCJ | 25036 | 2023-07-05 | 2021-09-28 | 3.4 | 2.31 | 2.97 | 2.0 | 0.004 | 0.60 | 0.0 | 0.05 | 11.12 | 0.01 | 2.200 | 9.22 | 0.00 | 5.7 | 94.3 | 0.0 | -0.25 | 0.75 | 0.72 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9336 | 1131 | 6 | 2 | 7 | 0 | 0 | logfile |
✘ | 6PCV | 20308 | 2023-07-05 | 2019-06-18 | 3.2 | 2.93 | 3.33 | 3.3 | 0.006 | 0.98 | 0.0 | 0.06 | 14.31 | 0.01 | 2.235 | 6.90 | 0.71 | 4.0 | 96.0 | 0.0 | -3.37 | 0.71 | 0.72 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9035 | 1155 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VDD | 31914 | 2023-07-06 | 2021-09-06 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11940 | 1044 | 10 | 0 | 0 | 0 | 3736 | logfile |
✘ | 7MD3 | 23764 | 2023-07-08 | 2021-04-03 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45992 | 3133 | 13 | 0 | 8 | 0 | 22961 | logfile |
✘ | 7R8B | 24314 | 2023-07-05 | 2021-06-26 | 3.1 | 3.48 | — | 3.3 | 0.002 | 0.55 | 0.0 | 0.04 | 13.48 | 0.00 | 2.103 | 6.66 | 1.94 | 3.5 | 96.5 | 0.0 | -1.73 | 0.67 | 0.85 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10868 | 1371 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 7XEo | 33157 | 2023-07-09 | 2022-03-31 | 2.89 | 3.27 | 3.13 | 3.3 | 0.003 | 0.70 | 4.0 | 0.05 | 12.94 | 0.00 | 2.214 | 13.56 | 0.74 | 4.3 | 94.7 | 1.0 | 0.03 | 0.75 | 0.82 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19980 | 2456 | 4 | 0 | 0 | 0 | 0 | logfile |