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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6o7K | 0643 | 2023-07-04 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.3 | 0.004 | 0.69 | 0.0 | 0.04 | 15.44 | 0.00 | 2.073 | 20.70 | 0.00 | 8.3 | 91.3 | 0.4 | -1.56 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 6o9K | 0662 | 2023-07-21 | 2019-03-14 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.96 | — | — | — | 4.0 | 0.004 | 0.74 | 0.0 | 0.04 | 16.90 | 0.01 | 2.050 | 28.53 | 1.02 | 10.2 | 89.2 | 0.6 | -2.50 | — | 0.92 | 0.85 | — | 146597 | 6162 | 55 | 4594 | 0 | 0 | 0 | logfile |
✘ | 7E0H | 30932 | 2023-07-04 | 2021-01-28 | 3.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8017 | 661 | 6 | 0 | 57 | 0 | 0 | logfile |
✘ | 6oES | 20036 | 2023-07-08 | 2019-03-27 | 3.06 | 3.17 | — | 3.1 | 0.005 | 0.77 | 2.0 | 0.05 | 19.56 | 0.01 | 2.226 | 4.56 | 2.87 | 3.4 | 96.4 | 0.2 | -3.12 | 0.81 | 0.83 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16829 | 1784 | 14 | 128 | 4 | 2 | 0 | logfile |
✘ | 8GNJ | 34166 | 2023-07-04 | 2022-08-24 | 3.78 | 3.60 | 3.67 | 3.6 | 0.012 | 1.34 | 0.0 | 0.07 | 15.38 | 0.01 | 1.811 | 12.03 | 0.00 | 4.6 | 95.4 | 0.0 | -3.73 | 0.66 | 0.81 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5832 | 746 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 3JC6 | 6534 | 2023-07-11 | 2015-11-24 | 3.7 | 4.01 | — | 3.9 | 0.009 | 1.54 | 0.0 | 0.06 | 12.91 | 0.01 | 1.203 | 39.73 | 0.87 | 9.8 | 89.0 | 1.1 | -3.87 | 0.79 | 0.76 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23732 | 2953 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 6PSX | 20467 | 2023-07-06 | 2019-07-14 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.01 | — | — | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11074 | 1372 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7XL3 | 33271 | 2023-07-12 | 2022-04-21 | 3.13 | 3.20 | — | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 12.03 | 0.00 | 2.263 | 4.77 | 1.08 | 2.9 | 97.1 | 0.0 | -4.73 | 0.73 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25700 | 3480 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 7DEG | 30657 | 2023-07-06 | 2020-11-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12852 | 1520 | 12 | 0 | 18 | 0 | 0 | logfile |
✘ | 5VKQ | 8702 | 2023-07-18 | 2017-04-22 | 3.55 | 3.85 | 3.58 | 3.6 | 0.008 | 1.18 | 0.0 | 0.05 | 11.89 | 0.01 | 2.057 | 11.24 | 0.72 | 8.9 | 90.8 | 0.3 | -5.28 | 0.83 | 0.77 | 1.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41900 | 5996 | 8 | 0 | 32 | 0 | 0 | logfile |
✘ | 7XL4 | 33272 | 2023-07-11 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 8HJ9 | 34835 | 2023-07-03 | 2022-11-22 | 3.12 | 3.29 | 3.00 | 3.2 | 0.004 | 0.65 | 0.0 | 0.04 | 15.54 | 0.00 | 2.234 | 10.94 | 0.00 | 2.7 | 97.3 | 0.0 | 1.80 | 0.43 | 0.76 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3274 | 416 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 5NiK | 3652 | 2023-07-16 | 2017-03-24 | 3.3 | 3.47 | — | 3.4 | 0.010 | 1.29 | 0.0 | 0.04 | 10.30 | 0.01 | 0.941 | 22.00 | 0.24 | 6.4 | 91.6 | 1.9 | -1.88 | 0.64 | 0.59 | 1.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35215 | 4582 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PVN | 20494 | 2023-07-10 | 2019-07-21 | 4.07 | 4.15 | — | 4.1 | 0.006 | 1.33 | 0.0 | 0.06 | 12.87 | 0.01 | 2.256 | 4.31 | 1.23 | 14.2 | 85.3 | 0.5 | -6.84 | 0.68 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20874 | 2576 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 6LBH | 0869 | 2023-07-05 | 2019-11-14 | 3.7 | 3.79 | — | 3.8 | 0.006 | 0.82 | 0.0 | 0.05 | 13.62 | 0.00 | 2.079 | 18.56 | 0.20 | 7.7 | 92.2 | 0.2 | -2.87 | 0.75 | 0.83 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9219 | 1236 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6D6R | 7809 | 2023-07-14 | 2018-04-22 | 3.45 | 2.80 | — | 3.3 | 0.008 | 0.68 | 0.0 | 0.04 | 10.12 | 0.00 | 1.816 | 9.28 | 0.03 | 10.0 | 90.0 | 0.0 | -4.48 | 0.83 | 0.79 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31639 | 3889 | 17 | 61 | 3 | 0 | 0 | logfile |
✘ | 6ZY9 | 11555 | 2023-07-07 | 2020-07-30 | 3.3 | 3.42 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 12.81 | 0.01 | 2.174 | 2.45 | 0.25 | 4.7 | 95.3 | 0.0 | -5.76 | 0.62 | 0.71 | 1.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14973 | 1985 | 14 | 0 | 4 | 0 | 0 | logfile |
✘ | 6ioL | 9696 | 2023-07-20 | 2018-10-30 | 3.76 | 3.62 | 3.77 | 3.8 | 0.005 | 0.97 | 0.0 | 0.06 | 10.77 | 0.01 | 2.201 | 5.12 | 0.33 | 5.6 | 94.4 | 0.0 | -4.06 | 0.63 | 0.80 | 2.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 49077 | 6450 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7KSQ | 23023 | 2023-07-16 | 2020-11-23 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36553 | 3347 | 42 | 0 | 219 | 45 | 0 | logfile |
✘ | 7F7F | 31487 | 2023-07-06 | 2021-06-29 | 3.81 | 3.37 | — | 3.8 | 0.008 | 1.12 | 0.0 | 0.06 | 11.80 | 0.01 | 2.121 | 6.53 | 0.31 | 9.6 | 90.3 | 0.1 | -5.60 | 0.64 | 0.70 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12076 | 1497 | 6 | 0 | 8 | 0 | 0 | logfile |