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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6PEK | 20327 | 2023-07-06 | 2019-06-20 | 4.2 | 4.25 | — | 4.2 | 0.005 | 0.73 | 0.0 | 0.03 | 13.79 | 0.00 | 1.913 | 4.42 | 0.00 | 0.8 | 99.2 | 0.0 | -2.47 | 0.70 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11106 | 1405 | 11 | 0 | 13 | 0 | 0 | logfile |
✘ | 8F0A | 28754 | 2023-07-09 | 2022-11-02 | 2.6 | 3.77 | 2.61 | 3.4 | 0.031 | 1.77 | 0.0 | 0.13 | 9.86 | 0.01 | 2.388 | 0.56 | 0.00 | 0.8 | 99.2 | 0.0 | 0.72 | 0.68 | 0.66 | 4.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18060 | 1212 | 9 | 0 | 0 | 0 | 9189 | logfile |
✘ | 8CL3 | 16711 | 2023-07-06 | 2023-02-16 | 3.14 | 3.51 | 3.07 | 3.5 | 0.005 | 0.97 | 0.0 | 0.13 | 12.73 | 0.01 | 0.985 | 10.68 | 0.00 | 0.9 | 99.1 | 0.0 | -1.02 | 0.59 | 0.70 | 2.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | 1.66 | — | — | — | 2.74 | 10272 | 1350 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VL6 | 21231 | 2023-07-10 | 2020-01-22 | 4.6 | 5.00 | 4.54 | 4.6 | 0.019 | 1.46 | 0.0 | 0.09 | 11.38 | 0.01 | 2.431 | 0.59 | 0.00 | 0.9 | 99.1 | 0.0 | 0.45 | 0.87 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21504 | 2640 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6KNG | 0731 | 2023-07-04 | 2019-08-05 | 2.85 | 3.15 | — | 3.1 | 0.005 | 0.65 | 0.0 | 0.05 | 14.34 | 0.00 | 2.093 | 4.97 | 3.68 | 0.9 | 99.1 | 0.0 | -2.31 | 0.83 | 0.91 | 4.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7749 | 1002 | 6 | 0 | 6 | 0 | 0 | logfile |
✘ | 7Fii | 31598 | 2023-07-05 | 2021-07-31 | 4.3 | 4.37 | — | 4.1 | 0.002 | 0.36 | 0.0 | 0.04 | 8.97 | 0.00 | 2.073 | 1.66 | 0.00 | 0.9 | 99.1 | 0.0 | 3.08 | 0.64 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8765 | 1522 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VWK | 21419 | 2023-07-04 | 2020-02-20 | 3.3 | 3.56 | — | 3.5 | 0.010 | 1.30 | 4.0 | 0.07 | 12.71 | 0.01 | 2.355 | 0.98 | 0.59 | 0.9 | 99.1 | 0.0 | -0.35 | 0.65 | 0.83 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8423 | 1133 | 13 | 0 | 0 | 0 | 0 | logfile |
✘ | 6oVH | 20212 | 2023-07-05 | 2019-05-07 | 2.6 | 2.81 | 2.71 | 2.8 | 0.014 | 1.10 | 0.0 | 0.04 | 17.48 | 0.01 | 1.203 | 1.15 | 4.55 | 1.0 | 99.0 | 0.0 | -6.34 | 0.75 | 0.87 | 4.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10895 | 1272 | 36 | 0 | 68 | 171 | 0 | logfile |
✘ | 7UNL | 26626 | 2023-07-06 | 2022-04-11 | 2.45 | 3.35 | 2.50 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 14.66 | 0.00 | 2.143 | 2.41 | 1.94 | 1.1 | 98.9 | 0.0 | 2.30 | 0.72 | 0.83 | 3.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11724 | 734 | 6 | 0 | 8 | 120 | 5900 | logfile |
✘ | 7Y81 | 33677 | 2023-07-06 | 2022-06-22 | 2.54 | 2.77 | 2.62 | 2.8 | 0.006 | 0.86 | 0.0 | 0.06 | 19.33 | 0.01 | 2.034 | 7.10 | 2.91 | 1.2 | 98.8 | 0.0 | -1.88 | 0.65 | 0.80 | 3.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11044 | 1223 | 4 | 55 | 5 | 0 | 0 | logfile |
✘ | 6VL5 | 21230 | 2023-07-07 | 2020-01-22 | 4.5 | 4.57 | 4.20 | 4.4 | 0.019 | 1.72 | 0.0 | 0.10 | 10.23 | 0.01 | 2.242 | 0.64 | 0.20 | 1.2 | 98.8 | 0.0 | 0.88 | 0.79 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15039 | 1719 | 42 | 0 | 105 | 0 | 0 | logfile |
✘ | 7A6B | 11669 | 2023-07-14 | 2020-08-25 | 1.33 | 1.21 | — | 1.3 | 0.015 | 1.60 | 24.0 | 0.12 | 16.78 | 0.01 | 1.893 | 4.97 | 4.17 | 1.2 | 98.8 | 0.0 | 2.52 | 0.52 | 0.65 | 9.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41494 | 4152 | 72 | 0 | 32 | 3854 | 0 | logfile |
✘ | 7D4P | 30575 | 2023-07-10 | 2020-09-24 | 2.7 | 3.03 | 2.86 | 3.0 | 0.007 | 0.80 | 0.0 | 0.04 | 13.57 | 0.00 | 2.269 | 4.62 | 0.67 | 1.2 | 98.8 | 0.0 | 2.42 | 0.58 | 0.76 | 3.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22472 | 2676 | 8 | 0 | 28 | 0 | 0 | logfile |
✘ | 7L8G | 23233 | 2023-07-08 | 2020-12-31 | 4.3 | 4.35 | 4.01 | 4.1 | 0.022 | 1.76 | 0.0 | 0.16 | 10.27 | 0.02 | 2.354 | 1.35 | 0.00 | 1.2 | 98.8 | 0.0 | 0.64 | 0.79 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15802 | 1695 | 39 | 0 | 307 | 0 | 0 | logfile |
✘ | 7SXY | 25510 | 2023-07-04 | 2021-11-24 | 2.79 | 3.53 | — | 3.2 | 0.005 | 0.84 | 0.0 | 0.06 | 13.35 | 0.01 | 2.303 | 2.81 | 0.00 | 1.3 | 98.7 | 0.0 | -0.48 | 0.82 | 0.87 | 3.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6557 | 797 | 4 | 0 | 7 | 0 | 0 | logfile |
✘ | 8EFQ | 28088 | 2023-07-04 | 2022-09-08 | 3.3 | 3.58 | 3.24 | 3.6 | 0.004 | 0.81 | 0.0 | 0.05 | 8.64 | 0.01 | 2.298 | 3.12 | 0.00 | 1.4 | 98.6 | 0.0 | -1.52 | 0.60 | 0.72 | 1.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7046 | 892 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 7XL4 | 33272 | 2023-07-11 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 7UV9 | 26809 | 2023-07-07 | 2022-04-29 | 3.2 | 2.64 | 3.07 | 3.0 | 0.009 | 0.89 | 0.0 | 0.06 | 26.20 | 0.01 | 1.561 | 5.75 | 0.30 | 1.4 | 98.6 | 0.0 | 1.22 | 0.77 | 0.75 | 1.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15342 | 1164 | 11 | 292 | 2 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2023-07-11 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 7oN1 | 12993 | 2023-07-06 | 2021-05-25 | 3.35 | 3.18 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.03 | 26.28 | 0.00 | 2.120 | 6.38 | 0.00 | 1.5 | 98.5 | 0.0 | -0.25 | 0.82 | 0.83 | 1.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11150 | 777 | 12 | 246 | 0 | 0 | 0 | logfile |