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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6o9K | 0662 | 2023-07-21 | 2019-03-14 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.96 | — | — | — | 4.0 | 0.004 | 0.74 | 0.0 | 0.04 | 16.90 | 0.01 | 2.050 | 28.53 | 1.02 | 10.2 | 89.2 | 0.6 | -2.50 | — | 0.92 | 0.85 | — | 146597 | 6162 | 55 | 4594 | 0 | 0 | 0 | logfile |
✘ | 7ARM | 11887 | 2023-07-06 | 2020-10-25 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.79 | — | — | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.73 | — | — | — | 1.11 | 10971 | 1438 | 7 | 0 | 2 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-07-04 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.3 | 0.004 | 0.69 | 0.0 | 0.04 | 15.44 | 0.00 | 2.073 | 20.70 | 0.00 | 8.3 | 91.3 | 0.4 | -1.56 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 7RGP | 24453 | 2023-07-05 | 2021-07-15 | 2.9 | 2.76 | — | 2.7 | 0.006 | 0.92 | 0.0 | 0.05 | 14.39 | 0.01 | 2.145 | 17.77 | 0.88 | 8.3 | 91.7 | 0.0 | -2.81 | 0.57 | 0.75 | 2.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.30 | — | — | — | 2.39 | 10795 | 1383 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RBT | 24401 | 2023-07-06 | 2021-07-06 | 3.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.82 | — | — | 2.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.87 | — | — | — | 2.09 | 10881 | 1386 | 7 | 0 | 1 | 0 | 0 | logfile |
✘ | 8D1V | 27138 | 2023-07-06 | 2022-05-27 | 2.82 | 2.27 | 2.69 | 2.7 | 0.006 | 0.74 | 0.0 | 0.04 | 15.50 | 0.00 | 2.059 | 25.76 | 0.00 | 5.2 | 94.8 | 0.0 | -0.54 | 0.62 | 0.78 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.20 | — | — | — | 3.78 | 10982 | 1229 | 4 | 52 | 4 | 0 | 9 | logfile |
✘ | 7PPo | 13583 | 2023-07-06 | 2021-09-14 | 2.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.62 | — | — | 3.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.47 | — | — | — | 3.40 | 10990 | 1383 | 5 | 0 | 2 | 0 | 0 | logfile |
✘ | 7ZRG | 14913 | 2023-07-06 | 2022-05-04 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.09 | — | — | 1.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | 0.49 | — | — | — | 1.40 | 11032 | 1448 | 6 | 0 | 10 | 0 | 0 | logfile |
✘ | 8CL3 | 16711 | 2023-07-06 | 2023-02-16 | 3.14 | 3.51 | 3.07 | 3.5 | 0.005 | 0.97 | 0.0 | 0.13 | 12.73 | 0.01 | 0.985 | 10.68 | 0.00 | 0.9 | 99.1 | 0.0 | -1.02 | 0.59 | 0.70 | 2.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | 1.66 | — | — | — | 2.74 | 10272 | 1350 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7L20 | 23121 | 2023-07-04 | 2020-12-15 | 3.15 | 3.39 | — | 3.4 | 0.007 | 0.87 | 0.0 | 0.05 | 16.21 | 0.01 | 0.505 | 10.97 | 0.84 | 7.3 | 92.2 | 0.5 | -3.38 | 0.69 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110234 | 9454 | 67 | 1583 | 171 | 0 | 0 | logfile |
✘ | 6K61 | 9918 | 2023-07-20 | 2019-05-31 | 2.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 49283 | 4542 | 44 | 0 | 259 | 0 | 0 | logfile |
✘ | 6Jii | 9834 | 2023-07-06 | 2019-02-21 | 4.2 | 4.38 | — | 4.1 | 0.008 | 1.12 | 0.0 | 0.06 | 11.41 | 0.01 | 2.208 | 7.63 | 0.57 | 11.2 | 88.4 | 0.4 | -4.07 | 0.78 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 115028 | 15012 | 16 | 0 | 16 | 0 | 0 | logfile |
✘ | 6UZA | 20954 | 2023-07-11 | 2019-11-14 | 3.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23284 | 2936 | 8 | 0 | 20 | 0 | 0 | logfile |
✘ | 5GM6 | 9524 | 2023-07-05 | 2016-07-12 | 3.5 | 3.61 | — | 3.6 | 0.012 | 1.33 | 11.0 | 0.08 | 13.79 | 0.01 | 1.303 | 18.95 | 3.36 | 6.6 | 92.1 | 1.2 | -3.54 | 0.58 | 0.83 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112064 | 12796 | 55 | 361 | 881 | 0 | 0 | logfile |
✘ | 7W92 | 32359 | 2023-07-12 | 2021-12-09 | 3.1 | 2.79 | — | 3.3 | 0.003 | 0.67 | 0.0 | 0.05 | 13.05 | 0.01 | 2.306 | 2.89 | 0.11 | 3.7 | 96.3 | 0.0 | -4.34 | 0.80 | 0.76 | 2.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25071 | 3206 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6AHD | 9624 | 2023-07-14 | 2018-08-17 | 3.8 | 3.84 | — | 3.7 | 0.011 | 1.38 | 2.0 | 0.12 | 13.79 | 0.01 | 1.805 | 14.26 | 2.52 | 7.4 | 91.7 | 0.9 | -3.55 | 0.51 | 0.52 | 2.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 85302 | 14082 | 65 | 531 | 3 | 0 | 0 | logfile |
✘ | 6BPZ | 7128 | 2023-07-10 | 2017-11-27 | 3.8 | 3.99 | — | 3.8 | 0.010 | 1.55 | 0.0 | 0.08 | 11.48 | 0.01 | 2.260 | 3.97 | 0.14 | 7.9 | 91.8 | 0.2 | -4.66 | 0.55 | 0.66 | 1.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21453 | 2523 | 3 | 0 | 177 | 0 | 0 | logfile |
✘ | 5TAT | 8384 | 2023-07-08 | 2016-09-10 | 4.8 | 5.01 | 5.79 | 4.8 | 0.004 | 0.87 | 0.0 | 0.05 | 9.77 | 0.01 | 1.373 | 4.75 | 0.35 | 9.4 | 90.5 | 0.1 | -4.89 | 0.78 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121452 | 13500 | 12 | 0 | 3716 | 0 | 0 | logfile |
✘ | 6JiU | 9836 | 2023-07-05 | 2019-02-23 | 4.2 | 4.52 | — | 4.2 | 0.006 | 1.01 | 9.0 | 0.05 | 15.68 | 0.01 | 2.218 | 10.69 | 0.51 | 10.3 | 89.5 | 0.2 | -5.44 | 0.78 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112212 | 14684 | 20 | 0 | 24 | 0 | 0 | logfile |
✘ | 6JH6 | 9825 | 2023-07-04 | 2019-02-17 | 4.8 | 5.31 | — | 4.8 | 0.006 | 1.07 | 1.0 | 0.05 | 11.37 | 0.01 | 2.197 | 12.11 | 0.58 | 10.8 | 88.9 | 0.3 | -4.03 | 0.79 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108924 | 14244 | 12 | 0 | 8 | 0 | 0 | logfile |