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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7YPA | 33997 | 2023-07-12 | 2022-08-03 | 3.05 | 3.16 | 3.05 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 14.85 | 0.01 | 2.191 | 3.02 | 0.08 | 3.1 | 96.9 | 0.0 | -3.59 | 0.76 | 0.81 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26022 | 3129 | 10 | 86 | 3 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-07-04 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.3 | 0.004 | 0.69 | 0.0 | 0.04 | 15.44 | 0.00 | 2.073 | 20.70 | 0.00 | 8.3 | 91.3 | 0.4 | -1.56 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 6HiQ | 0227 | 2023-07-08 | 2018-08-30 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16110 | 1925 | 20 | 0 | 30 | 0 | 0 | logfile |
✘ | 6R0C | 4692 | 2023-07-06 | 2019-03-12 | 4.2 | 4.33 | 4.09 | 4.2 | 0.008 | 0.86 | 0.0 | 0.05 | 27.85 | 0.01 | 1.900 | 5.06 | 0.00 | 3.1 | 96.9 | 0.0 | -2.35 | 0.88 | 0.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11737 | 747 | 11 | 284 | 1 | 0 | 0 | logfile |
✘ | 7WU4 | 32819 | 2023-07-04 | 2022-02-05 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6887 | 888 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 7WU5 | 32820 | 2023-07-04 | 2022-02-05 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6948 | 888 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 6i53 | 4411 | 2023-07-07 | 2018-11-12 | 3.2 | 3.37 | 3.20 | 3.3 | 0.007 | 0.90 | 0.0 | 0.05 | 9.13 | 0.01 | 2.264 | 3.96 | 0.00 | 3.7 | 96.3 | 0.0 | -4.72 | 0.52 | 0.70 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15362 | 1821 | 16 | 0 | 34 | 0 | 0 | logfile |
✘ | 7ZR8 | 14886 | 2023-07-03 | 2022-05-03 | 3.7 | 3.81 | 3.43 | 3.8 | 0.003 | 0.46 | 0.0 | 0.04 | 8.45 | 0.00 | 2.181 | 7.02 | 0.74 | 3.9 | 96.1 | 0.0 | -0.94 | 0.72 | 0.82 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3693 | 471 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 6AEi | 9615 | 2023-07-10 | 2018-08-05 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21142 | 2568 | 8 | 0 | 13 | 0 | 0 | logfile |
✘ | 6TF9 | 10491 | 2023-07-07 | 2019-11-13 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7E0H | 30932 | 2023-07-04 | 2021-01-28 | 3.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8017 | 661 | 6 | 0 | 57 | 0 | 0 | logfile |
✘ | 7KSQ | 23023 | 2023-07-16 | 2020-11-23 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36553 | 3347 | 42 | 0 | 219 | 45 | 0 | logfile |
✘ | 6oES | 20036 | 2023-07-08 | 2019-03-27 | 3.06 | 3.17 | — | 3.1 | 0.005 | 0.77 | 2.0 | 0.05 | 19.56 | 0.01 | 2.226 | 4.56 | 2.87 | 3.4 | 96.4 | 0.2 | -3.12 | 0.81 | 0.83 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16829 | 1784 | 14 | 128 | 4 | 2 | 0 | logfile |
✘ | 8GNJ | 34166 | 2023-07-04 | 2022-08-24 | 3.78 | 3.60 | 3.67 | 3.6 | 0.012 | 1.34 | 0.0 | 0.07 | 15.38 | 0.01 | 1.811 | 12.03 | 0.00 | 4.6 | 95.4 | 0.0 | -3.73 | 0.66 | 0.81 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5832 | 746 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 3JC6 | 6534 | 2023-07-11 | 2015-11-24 | 3.7 | 4.01 | — | 3.9 | 0.009 | 1.54 | 0.0 | 0.06 | 12.91 | 0.01 | 1.203 | 39.73 | 0.87 | 9.8 | 89.0 | 1.1 | -3.87 | 0.79 | 0.76 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23732 | 2953 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 6D6R | 7809 | 2023-07-14 | 2018-04-22 | 3.45 | 2.80 | — | 3.3 | 0.008 | 0.68 | 0.0 | 0.04 | 10.12 | 0.00 | 1.816 | 9.28 | 0.03 | 10.0 | 90.0 | 0.0 | -4.48 | 0.83 | 0.79 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31639 | 3889 | 17 | 61 | 3 | 0 | 0 | logfile |
✘ | 6PSX | 20467 | 2023-07-06 | 2019-07-14 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.01 | — | — | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11074 | 1372 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7DEG | 30657 | 2023-07-06 | 2020-11-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12852 | 1520 | 12 | 0 | 18 | 0 | 0 | logfile |
✘ | 5VKQ | 8702 | 2023-07-18 | 2017-04-22 | 3.55 | 3.85 | 3.58 | 3.6 | 0.008 | 1.18 | 0.0 | 0.05 | 11.89 | 0.01 | 2.057 | 11.24 | 0.72 | 8.9 | 90.8 | 0.3 | -5.28 | 0.83 | 0.77 | 1.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41900 | 5996 | 8 | 0 | 32 | 0 | 0 | logfile |
✘ | 6oSQ | 20187 | 2023-07-21 | 2019-05-02 | 3.5 | 3.55 | — | 3.5 | 0.008 | 0.89 | 1.0 | 0.05 | 14.48 | 0.02 | 2.007 | 4.45 | 0.37 | 6.0 | 94.0 | 0.1 | -4.90 | 0.83 | 0.87 | 2.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 146756 | 5966 | 68 | 4642 | 438 | 0 | 0 | logfile |