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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6PEK | 20327 | 2023-07-06 | 2019-06-20 | 4.2 | 4.25 | — | 4.2 | 0.005 | 0.73 | 0.0 | 0.03 | 13.79 | 0.00 | 1.913 | 4.42 | 0.00 | 0.8 | 99.2 | 0.0 | -2.47 | 0.70 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11106 | 1405 | 11 | 0 | 13 | 0 | 0 | logfile |
✘ | 6X36 | 22019 | 2023-07-18 | 2020-05-21 | 4.7 | 4.72 | 5.52 | 4.6 | 0.002 | 0.53 | 0.0 | 0.03 | 10.40 | 0.00 | 2.228 | 5.80 | 0.00 | 2.2 | 97.8 | 0.0 | 0.96 | 0.76 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100164 | 13692 | 12 | 0 | 1376 | 0 | 0 | logfile |
✘ | 6ZoJ | 11320 | 2023-07-12 | 2020-07-07 | 2.8 | 3.07 | — | 3.0 | 0.002 | 0.51 | 0.0 | 0.03 | 14.31 | 0.00 | 1.694 | 4.40 | 1.39 | 2.3 | 97.7 | 0.0 | 0.76 | 0.80 | 0.85 | 3.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75783 | 4914 | 45 | 1704 | 169 | 0 | 0 | logfile |
✘ | 7oN1 | 12993 | 2023-07-06 | 2021-05-25 | 3.35 | 3.18 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.03 | 26.28 | 0.00 | 2.120 | 6.38 | 0.00 | 1.5 | 98.5 | 0.0 | -0.25 | 0.82 | 0.83 | 1.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11150 | 777 | 12 | 246 | 0 | 0 | 0 | logfile |
✘ | 8C95 | 16502 | 2023-07-18 | 2023-01-21 | 4.92 | 6.10 | 5.53 | 4.8 | 0.002 | 0.42 | 0.0 | 0.03 | 14.45 | 0.00 | 1.886 | 8.94 | 0.09 | 5.1 | 94.9 | 0.0 | 0.20 | 0.84 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40172 | 1460 | 16 | 1339 | 0 | 0 | 0 | logfile |
✘ | 7A95 | 11685 | 2023-07-14 | 2020-09-01 | 4.3 | 4.83 | 4.39 | 4.3 | 0.003 | 0.47 | 2.0 | 0.04 | 5.77 | 0.00 | 2.226 | 3.53 | 0.90 | 11.0 | 89.0 | 0.0 | -4.57 | 0.87 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29887 | 3794 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GW5 | 9541 | 2023-07-06 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.87 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Wo4 | 32638 | 2023-07-11 | 2022-01-20 | 4.47 | 3.18 | — | 3.4 | 0.003 | 0.48 | 0.0 | 0.04 | 8.44 | 0.00 | 2.234 | 5.78 | 3.89 | 6.1 | 93.9 | 0.0 | -3.76 | 0.83 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71208 | 9096 | 24 | 0 | 90 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2023-07-11 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 7XL3 | 33271 | 2023-07-12 | 2022-04-21 | 3.13 | 3.20 | — | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 12.03 | 0.00 | 2.263 | 4.77 | 1.08 | 2.9 | 97.1 | 0.0 | -4.73 | 0.73 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25700 | 3480 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 7XJi | 33228 | 2023-07-04 | 2022-04-18 | 3.9 | 3.60 | 3.70 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 13.86 | 0.00 | 2.165 | 9.02 | 0.00 | 4.3 | 95.7 | 0.0 | -0.25 | 0.61 | 0.78 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7851 | 1027 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2023-07-06 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6K0A | 30036 | 2023-07-10 | 2019-05-05 | 4.6 | 4.81 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 15.45 | 0.01 | 2.316 | 2.94 | 0.83 | 5.3 | 94.7 | 0.0 | -4.65 | 0.80 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22276 | 1364 | 14 | 516 | 2 | 0 | 0 | logfile |
✘ | 7YPA | 33997 | 2023-07-12 | 2022-08-03 | 3.05 | 3.16 | 3.05 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 14.85 | 0.01 | 2.191 | 3.02 | 0.08 | 3.1 | 96.9 | 0.0 | -3.59 | 0.76 | 0.81 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26022 | 3129 | 10 | 86 | 3 | 0 | 0 | logfile |
✘ | 7DK4 | 30702 | 2023-07-16 | 2020-11-23 | 3.8 | 3.20 | — | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 7.92 | 0.00 | 2.106 | 1.33 | 0.15 | 2.8 | 97.2 | 0.0 | -3.26 | 0.58 | 0.47 | 1.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34707 | 4470 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XL4 | 33272 | 2023-07-11 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 6D6R | 7809 | 2023-07-14 | 2018-04-22 | 3.45 | 2.80 | — | 3.3 | 0.008 | 0.68 | 0.0 | 0.04 | 10.12 | 0.00 | 1.816 | 9.28 | 0.03 | 10.0 | 90.0 | 0.0 | -4.48 | 0.83 | 0.79 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31639 | 3889 | 17 | 61 | 3 | 0 | 0 | logfile |
✘ | 8HJ9 | 34835 | 2023-07-03 | 2022-11-22 | 3.12 | 3.29 | 3.00 | 3.2 | 0.004 | 0.65 | 0.0 | 0.04 | 15.54 | 0.00 | 2.234 | 10.94 | 0.00 | 2.7 | 97.3 | 0.0 | 1.80 | 0.43 | 0.76 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3274 | 416 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 7JPT | 22422 | 2023-07-05 | 2020-08-09 | 3.2 | 3.54 | 3.50 | 3.5 | 0.002 | 0.55 | 0.0 | 0.04 | 13.65 | 0.00 | 2.267 | 8.72 | 3.48 | 6.8 | 93.2 | 0.1 | -4.02 | 0.66 | 0.71 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10220 | 1327 | 3 | 0 | 5 | 0 | 0 | logfile |
✘ | 7ZR8 | 14886 | 2023-07-03 | 2022-05-03 | 3.7 | 3.81 | 3.43 | 3.8 | 0.003 | 0.46 | 0.0 | 0.04 | 8.45 | 0.00 | 2.181 | 7.02 | 0.74 | 3.9 | 96.1 | 0.0 | -0.94 | 0.72 | 0.82 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3693 | 471 | 4 | 0 | 1 | 0 | 0 | logfile |