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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6o7K | 0643 | 2023-07-04 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.3 | 0.004 | 0.69 | 0.0 | 0.04 | 15.44 | 0.00 | 2.073 | 20.70 | 0.00 | 8.3 | 91.3 | 0.4 | -1.56 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 6o9K | 0662 | 2023-07-21 | 2019-03-14 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.96 | — | — | — | 4.0 | 0.004 | 0.74 | 0.0 | 0.04 | 16.90 | 0.01 | 2.050 | 28.53 | 1.02 | 10.2 | 89.2 | 0.6 | -2.50 | — | 0.92 | 0.85 | — | 146597 | 6162 | 55 | 4594 | 0 | 0 | 0 | logfile |
✘ | 7X76 | 33033 | 2023-07-06 | 2022-03-09 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64334 | 3793 | 18 | 168 | 15 | 0 | 31436 | logfile |
✘ | 7RH6 | 24456 | 2023-07-16 | 2021-07-16 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 90627 | 5901 | 42 | 0 | 60 | 0 | 43188 | logfile |
✘ | 6QUM | 4640 | 2023-07-19 | 2019-02-27 | 3.25 | 3.47 | — | 3.4 | 0.007 | 1.10 | 0.0 | 0.06 | 10.75 | 0.01 | 2.095 | 4.88 | 0.82 | 6.7 | 93.2 | 0.0 | -3.78 | 0.83 | 0.87 | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44900 | 5874 | 27 | 0 | 3 | 0 | 0 | logfile |
✘ | 7Q21 | 13777 | 2023-07-19 | 2021-10-22 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 47749 | 5585 | 47 | 0 | 320 | 0 | 0 | logfile |
✘ | 5UJZ | 8561 | 2023-07-16 | 2017-01-19 | 4.8 | 5.22 | — | 5.1 | 0.010 | 1.28 | 0.0 | 0.06 | 10.85 | 0.01 | 2.072 | 3.55 | 0.16 | 7.6 | 92.3 | 0.1 | -3.77 | 0.84 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✘ | 8DQ0 | 27645 | 2023-07-10 | 2022-07-18 | 3.74 | 3.61 | 3.79 | 3.6 | 0.008 | 0.98 | 0.0 | 0.05 | 15.88 | 0.01 | 2.203 | 6.20 | 1.20 | 4.9 | 95.1 | 0.0 | -1.54 | 0.53 | 0.72 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17129 | 1075 | 6 | 0 | 2 | 0 | 8445 | logfile |
✘ | 6MN7 | 9166 | 2023-07-10 | 2018-10-01 | 4.8 | 5.01 | — | 5.0 | 0.016 | 2.23 | 12.0 | 0.12 | 10.62 | 0.02 | 1.395 | 35.74 | 0.57 | 8.6 | 89.4 | 2.0 | -2.34 | 0.50 | 0.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21447 | 2418 | 66 | 0 | 192 | 0 | 0 | logfile |
✘ | 5UK0 | 8562 | 2023-07-16 | 2017-01-19 | 4.8 | 5.42 | — | 5.2 | 0.010 | 1.26 | 0.0 | 0.06 | 10.88 | 0.01 | 2.096 | 3.58 | 0.16 | 8.3 | 91.6 | 0.1 | -3.58 | 0.84 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✘ | 5UK1 | 8563 | 2023-07-16 | 2017-01-19 | 4.8 | 7.30 | — | 7.0 | 0.010 | 1.28 | 0.0 | 0.07 | 10.82 | 0.01 | 2.106 | 4.22 | 0.16 | 8.1 | 91.8 | 0.1 | -3.97 | 0.88 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✘ | 7DBH | 30631 | 2023-07-05 | 2020-10-20 | 3.6 | 4.18 | — | 3.4 | 0.007 | 0.74 | 1.0 | 0.05 | 28.88 | 0.00 | 1.451 | 11.99 | 0.17 | 3.2 | 96.8 | 0.0 | 0.54 | 0.91 | 0.85 | 2.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10631 | 697 | 10 | 252 | 0 | 0 | 0 | logfile |
✘ | 6TM2 | 10517 | 2023-07-04 | 2019-12-03 | 2.95 | 3.12 | — | 3.1 | 0.008 | 1.01 | 0.0 | 0.06 | 9.31 | 0.01 | 2.181 | 3.02 | 0.10 | 11.3 | 88.7 | 0.0 | -4.14 | 0.44 | 0.47 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 55254 | 7230 | 60 | 0 | 54 | 138 | 0 | logfile |
✘ | 6GDG | 4390 | 2023-07-04 | 2018-04-23 | 4.11 | 3.92 | — | 4.0 | 0.008 | 1.10 | 0.0 | 0.06 | 12.81 | 0.00 | 2.449 | 0.87 | 2.07 | 4.9 | 94.6 | 0.5 | -3.15 | 0.76 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7223 | 997 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 6KUR | 9581 | 2023-07-06 | 2019-09-02 | 3.7 | 3.80 | — | 3.8 | 0.004 | 0.79 | 0.0 | 0.05 | 10.86 | 0.01 | 2.143 | 6.20 | 1.01 | 7.0 | 92.9 | 0.1 | -4.96 | 0.74 | 0.78 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12384 | 1465 | 5 | 28 | 0 | 0 | 0 | logfile |
✘ | 6R10 | 4703 | 2023-07-17 | 2019-03-13 | 4.3 | 4.31 | — | 4.2 | 0.007 | 0.96 | 0.0 | 0.06 | 9.71 | 0.01 | 2.155 | 5.28 | 0.11 | 7.6 | 92.4 | 0.0 | -3.74 | 0.84 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38522 | 5842 | 28 | 0 | 3 | 0 | 0 | logfile |
✘ | 7ND7 | 12278 | 2023-07-16 | 2021-01-30 | 3.6 | 3.91 | — | 3.8 | 0.004 | 0.63 | 0.0 | 0.05 | 11.00 | 0.00 | 2.229 | 3.62 | 0.38 | 3.7 | 96.2 | 0.2 | -0.12 | 0.77 | 0.72 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29591 | 3699 | 30 | 0 | 64 | 0 | 0 | logfile |
✘ | 5ZAK | 6904 | 2023-07-06 | 2018-02-07 | 4.4 | 3.52 | — | 3.2 | 0.009 | 1.61 | 1.0 | 0.07 | 11.72 | 0.01 | 2.185 | 17.87 | 0.72 | 17.3 | 82.4 | 0.3 | -5.20 | 0.80 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11112 | 1389 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7QEV | 13942 | 2023-07-03 | 2021-12-03 | 2.9 | 3.46 | — | 3.1 | 0.009 | 0.86 | 0.0 | 0.05 | 13.68 | 0.00 | 2.164 | 5.92 | 0.00 | 4.3 | 95.7 | 0.0 | -0.15 | 0.79 | 0.86 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3204 | 383 | 6 | 0 | 8 | 8 | 0 | logfile |
✘ | 7o3C | 12703 | 2023-07-19 | 2021-04-01 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48532 | 5967 | 51 | 0 | 41 | 0 | 0 | logfile |