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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7V9C | 31815 | 2023-10-11 | 2021-08-24 | 4.5 | 3.01 | 4.36 | 3.5 | 0.002 | 0.44 | 0.0 | 0.03 | 28.95 | 0.00 | 2.240 | 8.56 | 1.27 | 5.0 | 94.1 | 0.9 | -0.37 | 0.60 | 0.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23228 | 1518 | 18 | 546 | 0 | 0 | 0 | logfile |
✘ | 8BUU | 16246 | 2023-10-18 | 2022-11-30 | 2.9 | 3.66 | 2.92 | 3.1 | 0.004 | 0.56 | 0.0 | 0.03 | 14.06 | 0.01 | 1.758 | 4.20 | 0.95 | 3.1 | 96.9 | 0.1 | -1.03 | 0.83 | 0.77 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144765 | 5859 | 60 | 4584 | 107 | 0 | 0 | logfile |
✘ | 6X36 | 22019 | 2023-10-19 | 2020-05-21 | 4.7 | 4.72 | 5.52 | 4.6 | 0.002 | 0.53 | 0.0 | 0.03 | 10.40 | 0.00 | 2.228 | 5.80 | 0.00 | 2.2 | 97.8 | 0.0 | 0.96 | 0.76 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100164 | 13692 | 12 | 0 | 1376 | 0 | 0 | logfile |
✘ | 8BF8 | 16016 | 2023-10-03 | 2022-10-24 | 2.8 | 3.14 | 2.80 | 3.1 | 0.003 | 0.47 | 0.0 | 0.03 | 13.85 | 0.00 | 2.203 | 8.73 | 0.93 | 2.7 | 97.3 | 0.0 | 0.92 | 0.64 | 0.76 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4686 | 302 | 2 | 111 | 0 | 0 | 0 | logfile |
✘ | 7NVN | 12607 | 2023-10-10 | 2021-03-15 | 3.0 | 3.12 | 2.93 | 3.1 | 0.004 | 0.62 | 0.0 | 0.04 | 14.51 | 0.00 | 1.909 | 8.75 | 1.66 | 3.2 | 96.7 | 0.1 | -2.07 | 0.64 | 0.77 | 2.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69139 | 8970 | 51 | 0 | 48 | 19 | 0 | logfile |
✘ | 7TFi | 25873 | 2023-10-10 | 2022-01-06 | 3.41 | 3.65 | — | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 15.00 | 0.00 | 2.049 | 8.57 | 0.05 | 3.2 | 96.8 | 0.0 | -0.07 | 0.77 | 0.82 | 1.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20573 | 2480 | 15 | 42 | 9 | 0 | 0 | logfile |
✘ | 7LWD | 23545 | 2023-10-03 | 2021-03-01 | 3.65 | 3.91 | 3.58 | 3.9 | 0.011 | 0.97 | 0.0 | 0.04 | 14.88 | 0.00 | 2.024 | 11.24 | 0.00 | 6.4 | 93.6 | 0.0 | -4.15 | 0.67 | 0.81 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6163 | 769 | 4 | 0 | 3 | 0 | 0 | logfile |
✘ | 7R5V | 14341 | 2023-10-10 | 2022-02-11 | 4.55 | 4.79 | — | 4.5 | 0.003 | 0.68 | 1.0 | 0.04 | 16.46 | 0.00 | 2.168 | 14.18 | 0.21 | 2.8 | 97.2 | 0.0 | 1.11 | 0.82 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18507 | 2138 | 13 | 63 | 0 | 0 | 0 | logfile |
✘ | 7SH2 | 25122 | 2023-10-10 | 2021-10-07 | 3.23 | 3.55 | — | 3.5 | 0.002 | 0.56 | 0.0 | 0.04 | 15.06 | 0.00 | 2.135 | 7.83 | 0.04 | 4.4 | 95.6 | 0.0 | 0.45 | 0.69 | 0.68 | 1.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20933 | 2545 | 15 | 23 | 9 | 0 | 0 | logfile |
✘ | 7D61 | 30587 | 2023-10-13 | 2020-09-28 | 2.8 | 2.98 | — | 3.0 | 0.003 | 0.77 | 0.0 | 0.04 | 16.22 | 0.01 | 2.340 | 1.83 | 0.00 | 2.4 | 97.6 | 0.0 | -7.13 | 0.69 | 0.82 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26664 | 3168 | 22 | 0 | 55 | 0 | 0 | logfile |
✘ | 7VML | 33935 | 2023-10-09 | 2021-10-09 | 3.3 | 3.44 | 3.36 | 3.4 | 0.002 | 0.51 | 0.0 | 0.04 | 13.79 | 0.00 | 2.158 | 8.25 | 1.39 | 6.1 | 93.9 | 0.0 | -2.64 | 0.70 | 0.77 | 1.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 123564 | 13608 | 12 | 0 | 3000 | 0 | 0 | logfile |
✘ | 7VAV | 31866 | 2023-10-14 | 2021-08-30 | 2.8 | 2.66 | 3.31 | 3.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.26 | 0.00 | 2.035 | 3.96 | 0.00 | 1.5 | 98.5 | 0.0 | 1.80 | 0.63 | 0.80 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29520 | 3787 | 14 | 0 | 4 | 0 | 0 | logfile |
✘ | 7S6C | 24868 | 2023-10-06 | 2021-09-13 | 3.1 | 3.69 | — | 3.3 | 0.005 | 0.74 | 0.0 | 0.04 | 14.16 | 0.01 | 2.068 | 4.24 | 0.00 | 4.0 | 96.0 | 0.0 | -0.30 | 0.82 | 0.76 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 47369 | 3190 | 10 | 0 | 2 | 0 | 23420 | logfile |
✘ | 7oF7 | 12872 | 2023-10-19 | 2021-05-04 | 2.5 | 3.11 | 2.55 | 2.9 | 0.006 | 0.59 | 0.0 | 0.04 | 14.65 | 0.01 | 1.785 | 5.62 | 0.00 | 3.4 | 96.6 | 0.0 | 0.85 | 0.86 | 0.88 | 3.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 101032 | 8655 | 64 | 1432 | 77 | 0 | 0 | logfile |
✘ | 6P7N | 20267 | 2023-10-18 | 2019-06-06 | 4.9 | 9.02 | 6.14 | 4.9 | 0.002 | 0.53 | 0.0 | 0.04 | 14.46 | 0.00 | 2.152 | 6.63 | 1.33 | 5.6 | 94.4 | 0.0 | -3.30 | 0.81 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20356 | 2352 | 10 | 52 | 4 | 0 | 0 | logfile |
✘ | 7CP9 | 30421 | 2023-10-04 | 2020-08-06 | 3.0 | 3.22 | — | 3.2 | 0.007 | 1.24 | 0.0 | 0.04 | 16.75 | 0.00 | 2.183 | 8.57 | 7.05 | 6.5 | 93.5 | 0.0 | -2.50 | 0.57 | 0.74 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8530 | 1021 | 16 | 0 | 11 | 0 | 0 | logfile |
✘ | 7WSF | 32756 | 2023-10-06 | 2022-01-29 | 2.87 | 3.08 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.04 | 11.23 | 0.00 | 2.016 | 6.14 | 3.87 | 2.7 | 97.3 | 0.0 | -0.12 | 0.72 | 0.81 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7170 | 879 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 7oF6 | 12871 | 2023-10-18 | 2021-05-04 | 2.6 | 3.23 | 2.55 | 2.9 | 0.003 | 0.53 | 0.0 | 0.04 | 14.89 | 0.01 | 1.785 | 4.21 | 0.01 | 3.0 | 97.0 | 0.0 | 1.49 | 0.90 | 0.89 | 3.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100321 | 8320 | 61 | 1519 | 94 | 0 | 0 | logfile |
✘ | 8CYD | 27075 | 2023-10-14 | 2022-05-23 | 2.6 | 3.24 | 2.62 | 3.0 | 0.002 | 0.51 | 0.0 | 0.04 | 12.52 | 0.01 | 1.930 | 6.47 | 0.32 | 4.9 | 94.7 | 0.4 | 0.04 | 0.77 | 0.79 | 2.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28454 | 3663 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7SL7 | 25193 | 2023-10-09 | 2021-10-22 | 3.1 | 3.35 | — | 3.4 | 0.002 | 0.56 | 0.0 | 0.04 | 13.08 | 0.00 | 2.149 | 8.91 | 0.24 | 5.5 | 94.2 | 0.3 | -0.86 | 0.77 | 0.82 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14732 | 1826 | 10 | 0 | 0 | 0 | 0 | logfile |