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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8SS7 | 40746 | 2023-10-09 | 2023-05-08 | 2.76 | 2.92 | 2.87 | 3.0 | 0.022 | 1.64 | 0.0 | 0.36 | 17.40 | 0.01 | 2.252 | 6.95 | 1.45 | 5.7 | 93.8 | 0.5 | -5.34 | 0.68 | 0.77 | 4.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19437 | 2266 | 12 | 0 | 46 | 0 | 0 | logfile |
✘ | 8T1B | 40958 | 2023-10-11 | 2023-06-02 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23180 | 2576 | 12 | 0 | 52 | 72 | 0 | logfile |
✘ | 6XXD | 10647 | 2023-10-07 | 2020-01-27 | 3.22 | 2.31 | — | 3.1 | 0.007 | 1.05 | 0.0 | 0.06 | 11.45 | 0.00 | 2.647 | 2.40 | 0.00 | 5.7 | 94.3 | 0.0 | -2.51 | 0.70 | 0.68 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14896 | 2000 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8SA5 | 40265 | 2023-10-03 | 2023-03-31 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7649 | 0 | 4 | 345 | 2 | 0 | 0 | logfile |
✘ | 6NEF | 9357 | 2023-10-14 | 2018-12-17 | 3.4 | 3.55 | — | 3.5 | 0.021 | 1.83 | 0.0 | 0.07 | 16.56 | 0.01 | 1.696 | 41.21 | 0.04 | 24.1 | 72.2 | 3.7 | -6.35 | 0.42 | 0.36 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29457 | 3663 | 9 | 0 | 63 | 0 | 0 | logfile |
✘ | 8iDE | 35365 | 2023-10-04 | 2023-02-13 | 3.21 | 3.58 | 3.38 | 3.5 | 0.003 | 0.71 | 0.0 | 0.04 | 13.14 | 0.00 | 1.906 | 14.45 | 0.24 | 14.1 | 85.4 | 0.5 | -1.37 | 0.75 | 0.77 | 2.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8393 | 1177 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8T1E | 40961 | 2023-10-10 | 2023-06-02 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22115 | 2516 | 12 | 0 | 43 | 36 | 0 | logfile |
✘ | 8PYS | 18031 | 2023-10-09 | 2023-07-26 | 2.7 | 2.59 | 2.72 | 2.7 | 0.003 | 0.49 | 0.0 | 0.04 | 12.64 | 0.00 | 2.388 | 8.00 | 0.00 | 2.3 | 97.7 | 0.0 | 2.07 | 0.77 | 0.86 | 4.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 122040 | 15900 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Y71 | 33650 | 2023-10-13 | 2022-06-21 | 3.12 | 3.37 | 3.19 | 3.4 | 0.003 | 0.61 | 1.0 | 0.05 | 15.45 | 0.00 | 1.894 | 7.57 | 0.17 | 4.6 | 95.3 | 0.1 | -0.81 | 0.67 | 0.74 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27075 | 3428 | 15 | 0 | 28 | 0 | 0 | logfile |
✘ | 8AZT | 15771 | 2023-10-03 | 2022-09-06 | 3.7 | 3.48 | 2.93 | 4.2 | 0.011 | 1.98 | 0.0 | 0.11 | 15.54 | 0.01 | 0.000 | 19.56 | 4.35 | 10.3 | 89.7 | 0.0 | -6.12 | 0.40 | 0.59 | 5.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5424 | 744 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6BZE | 7314 | 2023-10-07 | 2017-12-23 | 4.0 | 4.03 | — | 4.0 | 0.009 | 1.42 | 0.0 | 0.08 | 17.34 | 0.01 | 1.648 | 79.81 | 9.00 | 13.2 | 86.4 | 0.4 | -5.34 | 0.37 | 0.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7072 | 848 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7T4K | 25678 | 2023-10-03 | 2021-12-10 | 3.25 | 3.56 | 3.27 | 3.4 | 0.005 | 0.88 | 0.0 | 0.05 | 12.76 | 0.01 | 2.287 | 3.74 | 0.15 | 2.3 | 97.7 | 0.0 | 0.51 | 0.73 | 0.84 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6180 | 782 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VDM | 31923 | 2023-10-04 | 2021-09-07 | 2.98 | 2.90 | — | 3.0 | 0.008 | 1.29 | 0.0 | 0.07 | 13.54 | 0.01 | 2.261 | 4.17 | 0.22 | 4.5 | 95.5 | 0.0 | -2.74 | 0.66 | 0.77 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8563 | 1096 | 7 | 0 | 1 | 0 | 0 | logfile |
✘ | 8SA2 | 40262 | 2023-10-04 | 2023-03-31 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9268 | 0 | 4 | 420 | 2 | 0 | 0 | logfile |
✘ | 6RQT | 4985 | 2023-10-19 | 2019-05-16 | 4.0 | 4.06 | — | 4.1 | 0.007 | 1.20 | 2.0 | 0.07 | 13.82 | 0.01 | 1.938 | 13.90 | 1.35 | 14.8 | 85.0 | 0.1 | -5.39 | 0.64 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39820 | 4915 | 22 | 32 | 6 | 0 | 0 | logfile |
✘ | 8EiR | 28162 | 2023-10-03 | 2022-09-15 | 2.49 | 3.15 | 2.50 | 3.0 | 0.005 | 0.81 | 0.0 | 0.05 | 16.40 | 0.01 | 1.960 | 4.05 | 2.61 | 2.2 | 97.4 | 0.3 | -1.27 | 0.86 | 0.84 | 4.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4870 | 632 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7A92 | 11682 | 2023-10-05 | 2020-09-01 | 4.2 | 4.58 | 4.29 | 4.2 | 0.007 | 0.84 | 0.0 | 0.06 | 14.53 | 0.01 | 2.222 | 3.92 | 1.19 | 5.2 | 94.7 | 0.1 | -2.44 | 0.77 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10040 | 1231 | 5 | 0 | 10 | 0 | 0 | logfile |
✘ | 8FLE | 29276 | 2023-10-18 | 2022-12-21 | 2.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144139 | 8150 | 66 | 3646 | 93 | 0 | 0 | logfile |
✘ | 6XXE | 10648 | 2023-10-06 | 2020-01-27 | 3.49 | 2.31 | — | 3.3 | 0.007 | 1.09 | 0.0 | 0.06 | 11.82 | 0.00 | 2.471 | 6.11 | 2.27 | 11.0 | 89.0 | 0.0 | -4.99 | 0.62 | 0.57 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12816 | 1776 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 2XEA | 1730 | 2023-10-05 | 2010-05-12 | 4.6 | 4.10 | — | 4.2 | 0.012 | 2.12 | 0.0 | 0.12 | 20.46 | 0.02 | 1.226 | 2.63 | 3.68 | 8.6 | 90.1 | 1.3 | -3.51 | 0.39 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62671 | 7546 | 98 | 147 | 0 | 0 | 0 | logfile |