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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6PPD | 20433 | 2023-10-10 | 2019-07-06 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.49 | — | — | 2.40 | 3.6 | 0.004 | 0.72 | 0.0 | 0.04 | 15.94 | 0.00 | 2.084 | 10.22 | 0.40 | 4.9 | 95.0 | 0.0 | -1.64 | — | 0.50 | 0.82 | 2.02 | 68769 | 8728 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 4V19 | 2787 | 2023-10-10 | 2014-09-25 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.85 | — | — | 2.04 | 3.4 | 0.004 | 1.02 | 0.0 | 0.04 | 19.43 | 0.01 | 1.100 | 8.69 | 0.52 | 3.5 | 96.4 | 0.1 | 0.01 | — | 0.76 | 0.88 | 2.15 | 69409 | 4361 | 42 | 1583 | 171 | 204 | 0 | logfile |
✘ | 6PPE | 20434 | 2023-10-20 | 2019-07-06 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.78 | — | — | 4.24 | 3.5 | 0.004 | 0.55 | 0.0 | 0.04 | 14.59 | 0.00 | 1.924 | 5.42 | 0.00 | 2.3 | 97.7 | 0.0 | 1.70 | — | 0.77 | 0.86 | 3.68 | 43736 | 2814 | 42 | 0 | 0 | 14 | 21896 | logfile |
✘ | 6J99 | 9783 | 2023-10-10 | 2019-01-22 | 4.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.88 | — | — | — | 4.1 | 0.004 | 0.79 | 0.0 | 0.04 | 27.39 | 0.00 | 2.135 | 19.54 | 0.20 | 5.7 | 94.3 | 0.0 | -0.95 | — | 0.78 | 0.78 | — | 15266 | 1164 | 12 | 289 | 0 | 0 | 0 | logfile |
✘ | 8F8S | 28935 | 2023-10-10 | 2022-11-22 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.35 | — | — | 3.68 | 1.9 | 0.003 | 0.66 | 0.0 | 0.05 | 17.12 | 0.00 | 1.972 | 7.88 | 1.88 | 3.5 | 96.5 | 0.0 | 0.36 | — | 0.79 | 0.84 | 3.18 | 20371 | 2579 | 14 | 0 | 14 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-10-04 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.005 | 0.71 | 0.0 | 0.04 | 15.42 | 0.01 | 2.070 | 22.73 | 0.00 | 8.6 | 91.0 | 0.4 | -1.53 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 6o9K | 0662 | 2023-10-21 | 2019-03-14 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.96 | — | — | — | 4.0 | 0.003 | 0.71 | 0.0 | 0.03 | 16.29 | 0.01 | 2.027 | 24.45 | 0.78 | 8.9 | 90.5 | 0.5 | -2.16 | — | 0.92 | 0.85 | — | 146597 | 6162 | 55 | 4594 | 0 | 0 | 0 | logfile |
✘ | 6PC8 | 20299 | 2023-10-11 | 2019-06-16 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72169 | 967 | 8 | 3015 | 1 | 0 | 0 | logfile |
✘ | 6oDi | 20020 | 2023-10-10 | 2019-03-26 | 3.8 | 3.96 | — | 3.9 | 0.008 | 0.98 | 0.0 | 0.07 | 14.95 | 0.01 | 2.406 | 7.54 | 4.19 | 9.8 | 90.2 | 0.0 | -4.06 | 0.47 | 0.83 | 1.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20902 | 2772 | 14 | 0 | 0 | 0 | 0 | logfile |
✘ | 7KHR | 22880 | 2023-10-05 | 2020-10-21 | 3.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 61913 | 8212 | 44 | 0 | 36 | 0 | 0 | logfile |
✘ | 7AA5 | 11690 | 2023-10-09 | 2020-09-03 | 4.18 | 4.64 | — | 4.4 | 0.006 | 0.92 | 2.0 | 0.04 | 14.67 | 0.00 | 2.119 | 21.41 | 2.04 | 15.1 | 84.7 | 0.2 | -4.78 | 0.69 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19705 | 2448 | 5 | 0 | 1 | 0 | 8 | logfile |
✘ | 6ZZY | 11589 | 2023-10-03 | 2020-08-05 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54609 | 4594 | 44 | 0 | 379 | 0 | 0 | logfile |
✘ | 7ZQ9 | 14867 | 2023-10-04 | 2022-04-29 | 2.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 92130 | 4713 | 47 | 0 | 397 | 88 | 35670 | logfile |
✘ | 7E1V | 30943 | 2023-10-19 | 2021-02-03 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 42279 | 5122 | 34 | 0 | 59 | 0 | 0 | logfile |
✘ | 8FPJ | 29366 | 2023-10-12 | 2023-01-04 | 2.74 | 2.94 | 2.78 | 3.0 | 0.004 | 0.69 | 0.0 | 0.04 | 14.26 | 0.00 | 2.008 | 5.89 | 0.00 | 5.7 | 94.3 | 0.0 | -0.24 | 0.69 | 0.82 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25960 | 1596 | 6 | 0 | 1 | 0 | 13143 | logfile |
✘ | 7UT6 | 26756 | 2023-10-08 | 2022-04-26 | 1.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16442 | 1998 | 12 | 0 | 8 | 415 | 0 | logfile |
✘ | 7LV0 | 23528 | 2023-10-22 | 2021-02-23 | 3.2 | 3.59 | — | 3.2 | 0.012 | 1.25 | 0.0 | 0.10 | 15.70 | 0.02 | 1.414 | 29.31 | 3.83 | 19.0 | 79.0 | 2.0 | -4.79 | 0.81 | 0.82 | 1.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 147330 | 5851 | 60 | 4734 | 0 | 0 | 0 | logfile |
✘ | 7ZGK | 14708 | 2023-10-06 | 2022-04-03 | 3.59 | 4.63 | 3.57 | 3.7 | 0.002 | 0.45 | 0.0 | 0.04 | 13.81 | 0.00 | 0.454 | 5.10 | 0.46 | 2.2 | 97.6 | 0.2 | 1.65 | 0.73 | 0.55 | 1.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13639 | 1723 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EJ4 | 28175 | 2023-10-19 | 2022-09-16 | 3.4 | 4.00 | 3.70 | 3.8 | 0.004 | 0.72 | 9.0 | 0.05 | 16.51 | 0.00 | 2.042 | 56.32 | 1.95 | 7.0 | 92.0 | 1.0 | -0.88 | 0.76 | 0.68 | 0.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100240 | 11110 | 30 | 0 | 20 | 0 | 14480 | logfile |
✘ | 6LY5 | 30012 | 2023-10-14 | 2020-02-13 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 81344 | 6510 | 76 | 0 | 723 | 153 | 0 | logfile |