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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8FPJ | 29366 | 2023-10-12 | 2023-01-04 | 2.74 | 2.94 | 2.78 | 3.0 | 0.004 | 0.69 | 0.0 | 0.04 | 14.26 | 0.00 | 2.008 | 5.89 | 0.00 | 5.7 | 94.3 | 0.0 | -0.24 | 0.69 | 0.82 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25960 | 1596 | 6 | 0 | 1 | 0 | 13143 | logfile |
✘ | 8D7R | 27231 | 2023-10-04 | 2022-06-07 | 3.9 | 4.13 | 3.91 | 4.0 | 0.003 | 0.54 | 0.0 | 0.04 | 11.99 | 0.00 | 2.345 | 5.62 | 0.00 | 8.1 | 91.9 | 0.0 | -3.25 | 0.60 | 0.56 | 0.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9627 | 1167 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 6X36 | 22019 | 2023-10-19 | 2020-05-21 | 4.7 | 4.72 | 5.52 | 4.6 | 0.002 | 0.53 | 0.0 | 0.03 | 10.40 | 0.00 | 2.228 | 5.80 | 0.00 | 2.2 | 97.8 | 0.0 | 0.96 | 0.76 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100164 | 13692 | 12 | 0 | 1376 | 0 | 0 | logfile |
✘ | 8iKA | 35507 | 2023-10-09 | 2023-02-28 | 2.75 | 2.89 | 2.81 | 2.9 | 0.008 | 1.22 | 0.0 | 0.07 | 12.95 | 0.02 | 2.225 | 4.42 | 0.00 | 1.5 | 98.5 | 0.0 | -0.45 | 0.82 | 0.88 | 4.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 122040 | 15900 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VL6 | 21231 | 2023-10-10 | 2020-01-22 | 4.6 | 5.00 | 4.54 | 4.6 | 0.019 | 1.46 | 0.0 | 0.09 | 11.38 | 0.01 | 2.431 | 0.59 | 0.00 | 0.9 | 99.1 | 0.0 | 0.45 | 0.87 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21504 | 2640 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8DG5 | 27416 | 2023-10-08 | 2022-06-23 | 3.26 | 3.59 | 3.37 | 3.5 | 0.011 | 1.42 | 1.0 | 0.06 | 14.99 | 0.01 | 2.013 | 8.22 | 0.00 | 8.0 | 91.7 | 0.3 | -2.73 | 0.69 | 0.69 | 1.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16269 | 1887 | 5 | 50 | 12 | 0 | 0 | logfile |
✘ | 8CSP | 26966 | 2023-10-10 | 2022-05-13 | 2.66 | 2.56 | 2.70 | 2.8 | 0.004 | 0.65 | 0.0 | 0.39 | 14.80 | 0.01 | 1.957 | 2.81 | 0.00 | 1.7 | 98.3 | 0.0 | 0.74 | 0.72 | 0.79 | 3.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69302 | 6645 | 40 | 738 | 38 | 0 | 0 | logfile |
✘ | 7QiY | 14003 | 2023-10-20 | 2021-12-16 | 2.58 | 2.55 | 2.47 | 2.5 | 0.008 | 0.74 | 0.0 | 0.04 | 13.02 | 0.02 | 1.714 | 1.92 | 0.00 | 1.5 | 98.5 | 0.0 | 0.57 | 0.80 | 0.88 | 4.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43805 | 1730 | 31 | 491 | 41 | 225 | 19242 | logfile |
✘ | 7PHM | 13420 | 2023-10-09 | 2021-08-17 | 2.2 | 2.20 | — | 2.2 | 0.009 | 0.91 | 0.0 | 0.06 | 9.20 | 0.01 | 2.260 | 2.25 | 0.00 | 1.5 | 98.5 | 0.0 | -1.09 | 0.76 | 0.87 | 6.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121560 | 15840 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 7V89 | 31794 | 2023-10-19 | 2021-08-22 | 2.8 | 3.36 | — | 3.2 | 0.003 | 0.58 | 0.0 | 0.05 | 14.31 | 0.00 | 2.128 | 8.98 | 0.00 | 4.8 | 95.2 | 0.0 | 0.26 | 0.79 | 0.80 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40034 | 4869 | 54 | 0 | 100 | 0 | 0 | logfile |
✘ | 7U5U | 26359 | 2023-10-10 | 2022-03-02 | 3.16 | 3.37 | 3.21 | 3.4 | 0.007 | 0.88 | 0.0 | 0.06 | 15.34 | 0.01 | 2.279 | 5.12 | 0.00 | 5.5 | 94.5 | 0.0 | -5.67 | 0.67 | 0.77 | 3.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10035 | 1283 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VRL | 21370 | 2023-10-03 | 2020-02-07 | 3.8 | 3.98 | 4.22 | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 14.10 | 0.00 | 2.159 | 10.65 | 0.00 | 4.9 | 95.1 | 0.0 | -3.12 | 0.49 | 0.69 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6141 | 764 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7LWD | 23545 | 2023-10-03 | 2021-03-01 | 3.65 | 3.91 | 3.58 | 3.9 | 0.011 | 0.97 | 0.0 | 0.04 | 14.88 | 0.00 | 2.024 | 11.24 | 0.00 | 6.4 | 93.6 | 0.0 | -4.15 | 0.67 | 0.81 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6163 | 769 | 4 | 0 | 3 | 0 | 0 | logfile |
✘ | 8CSR | 26968 | 2023-10-10 | 2022-05-13 | 2.54 | 2.48 | 2.56 | 2.6 | 0.004 | 0.65 | 0.0 | 0.38 | 14.52 | 0.01 | 1.910 | 2.68 | 0.00 | 1.7 | 98.3 | 0.0 | 1.19 | 0.72 | 0.78 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69868 | 6354 | 42 | 854 | 43 | 46 | 0 | logfile |
✘ | 7VAV | 31866 | 2023-10-14 | 2021-08-30 | 2.8 | 2.66 | 3.31 | 3.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.26 | 0.00 | 2.035 | 3.96 | 0.00 | 1.5 | 98.5 | 0.0 | 1.80 | 0.63 | 0.80 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29520 | 3787 | 14 | 0 | 4 | 0 | 0 | logfile |
✘ | 7V86 | 31791 | 2023-10-19 | 2021-08-22 | 2.8 | 3.32 | — | 3.2 | 0.004 | 0.60 | 0.0 | 0.05 | 14.18 | 0.00 | 2.163 | 9.23 | 0.00 | 5.3 | 94.7 | 0.0 | -0.17 | 0.77 | 0.78 | 2.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39996 | 4881 | 47 | 0 | 87 | 0 | 0 | logfile |
✘ | 7M6F | 23694 | 2023-10-12 | 2021-03-25 | 3.9 | 4.35 | — | 4.1 | 0.006 | 1.00 | 4.0 | 0.07 | 10.47 | 0.01 | 1.869 | 10.66 | 0.00 | 3.9 | 96.1 | 0.0 | 0.42 | 0.78 | 0.76 | 2.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24304 | 3446 | 25 | 0 | 63 | 0 | 0 | logfile |
✘ | 8HGo | 34744 | 2023-10-04 | 2022-11-15 | 3.31 | 2.35 | 3.32 | 2.2 | 0.004 | 0.71 | 0.0 | 0.05 | 7.94 | 0.01 | 2.284 | 4.45 | 0.00 | 8.0 | 91.8 | 0.2 | -3.74 | 0.71 | 0.68 | 2.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9227 | 1178 | 6 | 0 | 8 | 0 | 0 | logfile |
✘ | 8SL0 | 40570 | 2023-10-02 | 2023-04-20 | 3.3 | 4.17 | 3.09 | 3.8 | 0.003 | 0.62 | 0.0 | 0.05 | 16.00 | 0.00 | 2.201 | 7.96 | 0.00 | 8.4 | 91.2 | 0.4 | -1.67 | 0.42 | 0.83 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 1737 | 228 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7L85 | 23222 | 2023-10-10 | 2020-12-31 | 2.9 | 3.14 | 2.89 | 3.1 | 0.025 | 1.68 | 0.0 | 0.10 | 9.89 | 0.01 | 2.365 | 2.39 | 0.00 | 2.3 | 97.7 | 0.0 | 0.88 | 0.81 | 0.89 | 4.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20556 | 2664 | 24 | 0 | 0 | 0 | 0 | logfile |