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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7BSP | 30163 | 2023-10-05 | 2020-03-31 | 4.0 | 4.12 | — | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 13.90 | 0.01 | 1.928 | 53.93 | 0.00 | 14.6 | 85.4 | 0.0 | -7.27 | 0.68 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11010 | 1352 | 5 | 0 | 5 | 0 | 0 | logfile |
✘ | 7D61 | 30587 | 2023-10-13 | 2020-09-28 | 2.8 | 2.98 | — | 3.0 | 0.003 | 0.77 | 0.0 | 0.04 | 16.22 | 0.01 | 2.340 | 1.83 | 0.00 | 2.4 | 97.6 | 0.0 | -7.13 | 0.69 | 0.82 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26664 | 3168 | 22 | 0 | 55 | 0 | 0 | logfile |
✘ | 6PVN | 20494 | 2023-10-10 | 2019-07-21 | 4.07 | 4.15 | — | 4.1 | 0.006 | 1.33 | 0.0 | 0.06 | 12.87 | 0.01 | 2.256 | 4.31 | 1.23 | 14.2 | 85.3 | 0.5 | -6.84 | 0.68 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20874 | 2576 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 6HYD | 0308 | 2023-10-06 | 2018-10-19 | 3.9 | 4.01 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.05 | 9.33 | 0.01 | 2.319 | 2.63 | 0.24 | 5.7 | 94.0 | 0.3 | -6.69 | 0.74 | 0.77 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12168 | 1543 | 1 | 0 | 31 | 0 | 0 | logfile |
✘ | 6X2L | 22011 | 2023-10-04 | 2020-05-20 | 2.85 | 2.95 | — | 2.9 | 0.009 | 0.96 | 0.0 | 0.06 | 13.68 | 0.01 | 2.078 | 2.99 | 0.00 | 2.5 | 97.5 | 0.0 | -6.46 | 0.64 | 0.88 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9396 | 1233 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6NEF | 9357 | 2023-10-14 | 2018-12-17 | 3.4 | 3.55 | — | 3.5 | 0.021 | 1.83 | 0.0 | 0.07 | 16.56 | 0.01 | 1.696 | 41.21 | 0.04 | 24.1 | 72.2 | 3.7 | -6.35 | 0.42 | 0.36 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29457 | 3663 | 9 | 0 | 63 | 0 | 0 | logfile |
✘ | 6PVM | 20493 | 2023-10-10 | 2019-07-21 | 4.5 | 4.24 | — | 4.3 | 0.006 | 1.18 | 0.0 | 0.06 | 12.60 | 0.01 | 2.154 | 6.75 | 0.87 | 15.6 | 84.1 | 0.3 | -6.13 | 0.49 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21006 | 2576 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 8AZT | 15771 | 2023-10-03 | 2022-09-06 | 3.7 | 3.48 | 2.93 | 4.2 | 0.011 | 1.98 | 0.0 | 0.11 | 15.54 | 0.01 | 0.000 | 19.56 | 4.35 | 10.3 | 89.7 | 0.0 | -6.12 | 0.40 | 0.59 | 5.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5424 | 744 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 5Lii | 4053 | 2023-10-02 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7K4B | 22663 | 2023-10-10 | 2020-09-15 | 3.1 | 3.39 | — | 3.4 | 0.013 | 1.53 | 0.0 | 0.07 | 16.51 | 0.01 | 2.287 | 4.75 | 0.95 | 8.9 | 91.0 | 0.1 | -6.09 | 0.56 | 0.82 | 3.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21118 | 2428 | 8 | 0 | 62 | 0 | 0 | logfile |
✘ | 6JSi | 9882 | 2023-10-05 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✘ | 6PPL | 20442 | 2023-10-03 | 2019-07-08 | 3.02 | 3.14 | — | 3.1 | 0.010 | 0.99 | 0.0 | 0.25 | 14.17 | 0.01 | 1.917 | 3.20 | 0.23 | 2.7 | 97.3 | 0.0 | -6.00 | 0.74 | 0.86 | 4.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8155 | 980 | 6 | 0 | 4 | 0 | 0 | logfile |
✘ | 7EJ2 | 31149 | 2023-10-10 | 2021-04-01 | 3.3 | 3.53 | — | 3.4 | 0.009 | 0.94 | 0.0 | 0.06 | 15.52 | 0.01 | 2.290 | 7.49 | 0.19 | 4.8 | 95.1 | 0.1 | -5.99 | 0.81 | 0.85 | 3.23 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20968 | 2728 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 6BBM | 7076 | 2023-10-11 | 2017-10-18 | 4.1 | 4.24 | — | 4.1 | 0.008 | 1.20 | 0.0 | 0.06 | 16.70 | 0.01 | 2.231 | 9.86 | 0.58 | 13.8 | 86.1 | 0.2 | -5.97 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23956 | 2662 | 15 | 0 | 623 | 0 | 0 | logfile |
✘ | 5H64 | 6668 | 2023-10-20 | 2016-11-10 | 4.4 | 3.65 | — | 3.4 | 0.011 | 1.57 | 0.0 | 0.07 | 11.97 | 0.01 | 1.144 | 72.33 | 0.80 | 17.3 | 80.2 | 2.4 | -5.94 | 0.74 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45252 | 6430 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6o20 | 0607 | 2023-10-10 | 2019-02-22 | 3.3 | 3.73 | — | 3.7 | 0.008 | 1.09 | 1.0 | 0.06 | 15.65 | 0.01 | 2.014 | 8.33 | 0.40 | 8.4 | 91.5 | 0.0 | -5.94 | 0.56 | 0.78 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20950 | 2624 | 7 | 0 | 4 | 0 | 0 | logfile |
✘ | 6WHR | 21673 | 2023-10-11 | 2020-04-08 | 3.99 | 4.51 | — | 4.3 | 0.015 | 1.23 | 0.0 | 0.07 | 14.89 | 0.01 | 1.968 | 30.82 | 2.94 | 21.2 | 78.0 | 0.8 | -5.90 | 0.69 | 0.73 | 1.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23370 | 3166 | 10 | 0 | 14 | 0 | 0 | logfile |
✘ | 6oUA | 20200 | 2023-10-03 | 2019-05-04 | 4.18 | 4.32 | — | 4.3 | 0.008 | 1.37 | 1.0 | 0.07 | 13.97 | 0.01 | 2.294 | 7.03 | 2.35 | 17.4 | 82.3 | 0.3 | -5.89 | 0.72 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5208 | 637 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JRS | 9880 | 2023-10-04 | 2019-04-05 | 3.7 | 3.86 | — | 3.7 | 0.010 | 1.08 | 0.0 | 0.06 | 16.39 | 0.01 | 2.225 | 8.77 | 0.90 | 12.4 | 87.2 | 0.3 | -5.87 | 0.74 | 0.80 | 1.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112168 | 14652 | 20 | 0 | 24 | 0 | 0 | logfile |
✘ | 6DVZ | 8921 | 2023-10-10 | 2018-06-25 | 4.24 | 4.48 | — | 4.4 | 0.008 | 1.27 | 0.0 | 0.06 | 12.54 | 0.01 | 2.265 | 5.74 | 0.18 | 16.6 | 82.6 | 0.8 | -5.86 | 0.70 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20976 | 2572 | 8 | 0 | 12 | 0 | 0 | logfile |