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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6PPE | 20434 | 2023-10-20 | 2019-07-06 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.78 | — | — | 4.24 | 3.5 | 0.004 | 0.55 | 0.0 | 0.04 | 14.59 | 0.00 | 1.924 | 5.42 | 0.00 | 2.3 | 97.7 | 0.0 | 1.70 | — | 0.77 | 0.86 | 3.68 | 43736 | 2814 | 42 | 0 | 0 | 14 | 21896 | logfile |
✘ | 8F8S | 28935 | 2023-10-10 | 2022-11-22 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.35 | — | — | 3.68 | 1.9 | 0.003 | 0.66 | 0.0 | 0.05 | 17.12 | 0.00 | 1.972 | 7.88 | 1.88 | 3.5 | 96.5 | 0.0 | 0.36 | — | 0.79 | 0.84 | 3.18 | 20371 | 2579 | 14 | 0 | 14 | 0 | 0 | logfile |
✘ | 4V19 | 2787 | 2023-10-10 | 2014-09-25 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.85 | — | — | 2.04 | 3.4 | 0.004 | 1.02 | 0.0 | 0.04 | 19.43 | 0.01 | 1.100 | 8.69 | 0.52 | 3.5 | 96.4 | 0.1 | 0.01 | — | 0.76 | 0.88 | 2.15 | 69409 | 4361 | 42 | 1583 | 171 | 204 | 0 | logfile |
✘ | 6PPD | 20433 | 2023-10-10 | 2019-07-06 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.49 | — | — | 2.40 | 3.6 | 0.004 | 0.72 | 0.0 | 0.04 | 15.94 | 0.00 | 2.084 | 10.22 | 0.40 | 4.9 | 95.0 | 0.0 | -1.64 | — | 0.50 | 0.82 | 2.02 | 68769 | 8728 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6J99 | 9783 | 2023-10-10 | 2019-01-22 | 4.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.88 | — | — | — | 4.1 | 0.004 | 0.79 | 0.0 | 0.04 | 27.39 | 0.00 | 2.135 | 19.54 | 0.20 | 5.7 | 94.3 | 0.0 | -0.95 | — | 0.78 | 0.78 | — | 15266 | 1164 | 12 | 289 | 0 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-10-04 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.005 | 0.71 | 0.0 | 0.04 | 15.42 | 0.01 | 2.070 | 22.73 | 0.00 | 8.6 | 91.0 | 0.4 | -1.53 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 6o9K | 0662 | 2023-10-21 | 2019-03-14 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.96 | — | — | — | 4.0 | 0.003 | 0.71 | 0.0 | 0.03 | 16.29 | 0.01 | 2.027 | 24.45 | 0.78 | 8.9 | 90.5 | 0.5 | -2.16 | — | 0.92 | 0.85 | — | 146597 | 6162 | 55 | 4594 | 0 | 0 | 0 | logfile |
✘ | 7VC4 | 31888 | 2023-10-08 | 2021-09-01 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16311 | 1046 | 10 | 0 | 0 | 0 | 8079 | logfile |
✘ | 7W7F | 32343 | 2023-10-06 | 2021-12-04 | 3.35 | 3.74 | — | 3.7 | 0.015 | 1.03 | 0.0 | 0.07 | 17.29 | 0.01 | 2.144 | 13.75 | 0.31 | 8.1 | 91.6 | 0.3 | -1.42 | 0.42 | 0.74 | 1.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11987 | 1424 | 7 | 0 | 29 | 0 | 0 | logfile |
✘ | 7WGX | 32491 | 2023-10-12 | 2021-12-29 | 3.5 | 3.82 | — | 3.8 | 0.017 | 1.20 | 0.0 | 0.05 | 13.43 | 0.00 | 2.256 | 4.67 | 0.00 | 3.9 | 95.6 | 0.5 | -0.06 | 0.79 | 0.83 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25629 | 3165 | 21 | 0 | 60 | 0 | 0 | logfile |
✘ | 7ZDW | 14675 | 2023-10-04 | 2022-03-29 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9039 | 1159 | 2 | 0 | 3 | 0 | 0 | logfile |
✘ | 6CNA | 7529 | 2023-10-10 | 2018-03-07 | 4.6 | 5.89 | — | 5.8 | 0.007 | 0.93 | 0.0 | 0.05 | 8.64 | 0.01 | 2.021 | 26.55 | 0.00 | 9.7 | 90.1 | 0.3 | -4.80 | 0.57 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21426 | 3160 | 14 | 0 | 22 | 0 | 0 | logfile |
✘ | 6oo3 | 20143 | 2023-10-09 | 2019-04-22 | 2.9 | 3.02 | 2.79 | 3.0 | 0.014 | 1.22 | 0.0 | 0.06 | 9.99 | 0.01 | 2.495 | 2.15 | 0.00 | 3.1 | 96.9 | 0.0 | -2.84 | 0.68 | 0.85 | 4.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18236 | 2404 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 7WGV | 32490 | 2023-10-13 | 2021-12-29 | 3.2 | 3.63 | — | 3.6 | 0.017 | 1.29 | 0.0 | 0.05 | 14.17 | 0.00 | 2.151 | 5.03 | 0.00 | 3.2 | 96.8 | 0.0 | -0.59 | 0.79 | 0.83 | 3.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26931 | 3309 | 21 | 0 | 69 | 0 | 0 | logfile |
✘ | 7EJ8 | 31156 | 2023-10-04 | 2021-04-01 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8647 | 1100 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 6NR3 | 0488 | 2023-10-12 | 2019-01-22 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25180 | 3232 | 8 | 0 | 196 | 0 | 0 | logfile |
✘ | 6o20 | 0607 | 2023-10-10 | 2019-02-22 | 3.3 | 3.73 | — | 3.7 | 0.008 | 1.09 | 1.0 | 0.06 | 15.65 | 0.01 | 2.014 | 8.33 | 0.40 | 8.4 | 91.5 | 0.0 | -5.94 | 0.56 | 0.78 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20950 | 2624 | 7 | 0 | 4 | 0 | 0 | logfile |
✘ | 6iRS | 9721 | 2023-10-03 | 2018-11-14 | 3.3 | 3.44 | — | 3.4 | 0.011 | 1.36 | 0.0 | 0.07 | 12.69 | 0.01 | 2.150 | 13.11 | 3.66 | 8.8 | 90.3 | 0.9 | -5.69 | 0.62 | 0.77 | 2.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7337 | 926 | 7 | 0 | 10 | 0 | 0 | logfile |
✘ | 6WHG | 21672 | 2023-10-08 | 2020-04-08 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17116 | 2092 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 7K57 | 22676 | 2023-10-10 | 2020-09-16 | 3.7 | 4.17 | 3.78 | 4.0 | 0.007 | 1.03 | 0.0 | 0.06 | 15.81 | 0.01 | 2.107 | 6.10 | 0.94 | 5.9 | 94.1 | 0.0 | -4.46 | 0.85 | 0.83 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70104 | 8892 | 12 | 0 | 0 | 0 | 0 | logfile |