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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6PPE | 20434 | 2023-10-20 | 2019-07-06 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.78 | — | — | 4.24 | 3.5 | 0.004 | 0.55 | 0.0 | 0.04 | 14.59 | 0.00 | 1.924 | 5.42 | 0.00 | 2.3 | 97.7 | 0.0 | 1.70 | — | 0.77 | 0.86 | 3.68 | 43736 | 2814 | 42 | 0 | 0 | 14 | 21896 | logfile |
✘ | 4V19 | 2787 | 2023-10-10 | 2014-09-25 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.85 | — | — | 2.04 | 3.4 | 0.004 | 1.02 | 0.0 | 0.04 | 19.43 | 0.01 | 1.100 | 8.69 | 0.52 | 3.5 | 96.4 | 0.1 | 0.01 | — | 0.76 | 0.88 | 2.15 | 69409 | 4361 | 42 | 1583 | 171 | 204 | 0 | logfile |
✘ | 8F8S | 28935 | 2023-10-10 | 2022-11-22 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.35 | — | — | 3.68 | 1.9 | 0.003 | 0.66 | 0.0 | 0.05 | 17.12 | 0.00 | 1.972 | 7.88 | 1.88 | 3.5 | 96.5 | 0.0 | 0.36 | — | 0.79 | 0.84 | 3.18 | 20371 | 2579 | 14 | 0 | 14 | 0 | 0 | logfile |
✘ | 6PPD | 20433 | 2023-10-10 | 2019-07-06 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.49 | — | — | 2.40 | 3.6 | 0.004 | 0.72 | 0.0 | 0.04 | 15.94 | 0.00 | 2.084 | 10.22 | 0.40 | 4.9 | 95.0 | 0.0 | -1.64 | — | 0.50 | 0.82 | 2.02 | 68769 | 8728 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6J99 | 9783 | 2023-10-10 | 2019-01-22 | 4.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.88 | — | — | — | 4.1 | 0.004 | 0.79 | 0.0 | 0.04 | 27.39 | 0.00 | 2.135 | 19.54 | 0.20 | 5.7 | 94.3 | 0.0 | -0.95 | — | 0.78 | 0.78 | — | 15266 | 1164 | 12 | 289 | 0 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-10-04 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.005 | 0.71 | 0.0 | 0.04 | 15.42 | 0.01 | 2.070 | 22.73 | 0.00 | 8.6 | 91.0 | 0.4 | -1.53 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 6o9K | 0662 | 2023-10-21 | 2019-03-14 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.96 | — | — | — | 4.0 | 0.003 | 0.71 | 0.0 | 0.03 | 16.29 | 0.01 | 2.027 | 24.45 | 0.78 | 8.9 | 90.5 | 0.5 | -2.16 | — | 0.92 | 0.85 | — | 146597 | 6162 | 55 | 4594 | 0 | 0 | 0 | logfile |
✘ | 7ZWH | 14998 | 2023-10-19 | 2022-05-19 | 3.2 | 4.83 | 3.82 | 3.9 | 0.003 | 0.57 | 0.0 | 0.04 | 17.16 | 0.00 | 1.921 | 12.58 | 0.26 | 15.6 | 84.3 | 0.1 | -2.45 | 0.59 | 0.73 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40231 | 2660 | 8 | 0 | 20 | 0 | 19501 | logfile |
✘ | 6C1H | 7331 | 2023-10-10 | 2018-01-04 | 3.9 | 4.79 | 3.83 | 3.8 | 0.005 | 0.92 | 0.0 | 0.06 | 10.02 | 0.01 | 1.611 | 6.32 | 0.05 | 5.8 | 94.2 | 0.0 | -4.15 | 0.62 | 0.77 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20966 | 2752 | 12 | 0 | 10 | 0 | 0 | logfile |
✘ | 7Uii | 26546 | 2023-10-11 | 2022-03-29 | 2.6 | 2.91 | 2.65 | 2.9 | 0.003 | 0.61 | 0.0 | 0.05 | 13.58 | 0.00 | 2.234 | 5.76 | 0.00 | 5.1 | 94.9 | 0.0 | -0.77 | 0.60 | 0.87 | 4.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 130944 | 16926 | 93 | 0 | 186 | 186 | 0 | logfile |
✘ | 5KMG | 8266 | 2023-10-04 | 2016-06-27 | 3.5 | 4.13 | — | 4.0 | 0.019 | 1.34 | 0.0 | 0.10 | 12.53 | 0.02 | 1.894 | 3.71 | 0.00 | 5.8 | 92.0 | 2.2 | -1.01 | 0.49 | 0.75 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111594 | 13860 | 70 | 14 | 42 | 0 | 0 | logfile |
✘ | 8oPN | 17077 | 2023-10-14 | 2023-04-07 | 4.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28543 | 3555 | 13 | 0 | 40 | 0 | 0 | logfile |
✘ | 6DPW | 7975 | 2023-10-19 | 2018-06-09 | 3.5 | 3.71 | — | 3.7 | 0.009 | 1.43 | 0.0 | 0.08 | 15.58 | 0.01 | 2.040 | 2.61 | 0.82 | 2.3 | 97.6 | 0.1 | 0.22 | 0.68 | 0.85 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40812 | 5154 | 24 | 0 | 18 | 0 | 0 | logfile |
✘ | 8Do4 | 27590 | 2023-10-10 | 2022-07-12 | 3.2 | 3.38 | 3.21 | 3.5 | 0.005 | 0.81 | 0.0 | 0.05 | 16.40 | 0.00 | 2.056 | 12.09 | 1.54 | 3.4 | 96.6 | 0.0 | -0.40 | 0.69 | 0.68 | 1.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20163 | 2625 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6BJC | 7101 | 2023-10-19 | 2017-11-05 | 3.3 | 3.68 | — | 3.6 | 0.009 | 1.54 | 12.0 | 0.09 | 16.35 | 0.01 | 1.999 | 1.94 | 2.99 | 3.0 | 96.9 | 0.1 | -0.11 | 0.69 | 0.82 | 3.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41136 | 5204 | 26 | 0 | 24 | 0 | 0 | logfile |
✘ | 3JAT | 6352 | 2023-10-19 | 2015-06-20 | 3.5 | 3.68 | — | 3.7 | 0.009 | 1.54 | 12.0 | 0.09 | 16.21 | 0.01 | 1.855 | 1.71 | 0.55 | 3.1 | 96.8 | 0.1 | 0.14 | 0.64 | 0.82 | 2.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40500 | 5124 | 24 | 0 | 24 | 0 | 0 | logfile |
✘ | 6BNP | 7116 | 2023-10-04 | 2017-11-17 | 4.6 | 4.61 | 3.78 | 4.4 | 0.015 | 2.10 | 24.0 | 0.11 | 16.18 | 0.02 | 1.814 | 0.55 | 1.80 | 8.3 | 90.3 | 1.3 | -3.94 | 0.48 | 0.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56792 | 7160 | 22 | 0 | 16 | 0 | 0 | logfile |
✘ | 8iR1 | 35672 | 2023-10-26 | 2023-03-17 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 150033 | 8866 | 54 | 3644 | 2 | 0 | 0 | logfile |
✘ | 6XKJ | 22219 | 2023-10-05 | 2020-06-26 | 3.54 | 3.39 | — | 3.4 | 0.009 | 0.83 | 0.0 | 0.05 | 14.92 | 0.00 | 2.246 | 12.86 | 0.00 | 2.4 | 97.6 | 0.0 | 0.54 | 0.62 | 0.85 | 1.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11056 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8iX0 | 35785 | 2023-10-03 | 2023-03-31 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8238 | 654 | 6 | 0 | 57 | 0 | 0 | logfile |