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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6PPE | 20434 | 2023-10-20 | 2019-07-06 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.78 | — | — | 4.24 | 3.5 | 0.004 | 0.55 | 0.0 | 0.04 | 14.59 | 0.00 | 1.924 | 5.42 | 0.00 | 2.3 | 97.7 | 0.0 | 1.70 | — | 0.77 | 0.86 | 3.68 | 43736 | 2814 | 42 | 0 | 0 | 14 | 21896 | logfile |
✘ | 8F8S | 28935 | 2023-10-10 | 2022-11-22 | 2.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.35 | — | — | 3.68 | 1.9 | 0.003 | 0.66 | 0.0 | 0.05 | 17.12 | 0.00 | 1.972 | 7.88 | 1.88 | 3.5 | 96.5 | 0.0 | 0.36 | — | 0.79 | 0.84 | 3.18 | 20371 | 2579 | 14 | 0 | 14 | 0 | 0 | logfile |
✘ | 6o9K | 0662 | 2023-10-21 | 2019-03-14 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.96 | — | — | — | 4.0 | 0.003 | 0.71 | 0.0 | 0.03 | 16.29 | 0.01 | 2.027 | 24.45 | 0.78 | 8.9 | 90.5 | 0.5 | -2.16 | — | 0.92 | 0.85 | — | 146597 | 6162 | 55 | 4594 | 0 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-10-04 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.005 | 0.71 | 0.0 | 0.04 | 15.42 | 0.01 | 2.070 | 22.73 | 0.00 | 8.6 | 91.0 | 0.4 | -1.53 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 6PPD | 20433 | 2023-10-10 | 2019-07-06 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.49 | — | — | 2.40 | 3.6 | 0.004 | 0.72 | 0.0 | 0.04 | 15.94 | 0.00 | 2.084 | 10.22 | 0.40 | 4.9 | 95.0 | 0.0 | -1.64 | — | 0.50 | 0.82 | 2.02 | 68769 | 8728 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6J99 | 9783 | 2023-10-10 | 2019-01-22 | 4.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.88 | — | — | — | 4.1 | 0.004 | 0.79 | 0.0 | 0.04 | 27.39 | 0.00 | 2.135 | 19.54 | 0.20 | 5.7 | 94.3 | 0.0 | -0.95 | — | 0.78 | 0.78 | — | 15266 | 1164 | 12 | 289 | 0 | 0 | 0 | logfile |
✘ | 4V19 | 2787 | 2023-10-10 | 2014-09-25 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.85 | — | — | 2.04 | 3.4 | 0.004 | 1.02 | 0.0 | 0.04 | 19.43 | 0.01 | 1.100 | 8.69 | 0.52 | 3.5 | 96.4 | 0.1 | 0.01 | — | 0.76 | 0.88 | 2.15 | 69409 | 4361 | 42 | 1583 | 171 | 204 | 0 | logfile |
✘ | 8G1A | 29665 | 2023-10-06 | 2023-02-01 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13725 | 1574 | 7 | 0 | 37 | 0 | 0 | logfile |
✘ | 8BUU | 16246 | 2023-10-18 | 2022-11-30 | 2.9 | 3.66 | 2.92 | 3.1 | 0.004 | 0.56 | 0.0 | 0.03 | 14.06 | 0.01 | 1.758 | 4.20 | 0.95 | 3.1 | 96.9 | 0.1 | -1.03 | 0.83 | 0.77 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144765 | 5859 | 60 | 4584 | 107 | 0 | 0 | logfile |
✘ | 7XUH | 33469 | 2023-10-05 | 2022-05-18 | 2.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11380 | 1414 | 6 | 0 | 10 | 4 | 0 | logfile |
✘ | 8ESZ | 28582 | 2023-10-08 | 2022-10-15 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 67757 | 8114 | 68 | 0 | 95 | 0 | 0 | logfile |
✘ | 8AXV | 15704 | 2023-10-19 | 2022-09-01 | 2.8 | 2.95 | 2.82 | 2.9 | 0.007 | 0.57 | 0.0 | 0.04 | 17.87 | 0.00 | 1.948 | 41.20 | 2.35 | 4.9 | 95.1 | 0.0 | -0.64 | 0.70 | 0.74 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40380 | 5148 | 24 | 0 | 24 | 0 | 108 | logfile |
✘ | 8EU9 | 28609 | 2023-10-14 | 2022-10-18 | 3.48 | 2.61 | 3.59 | 2.9 | 0.006 | 1.06 | 0.0 | 0.06 | 17.26 | 0.01 | 1.528 | 5.67 | 0.00 | 3.6 | 96.4 | 0.0 | -1.81 | 0.73 | 0.77 | 1.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28517 | 3660 | 16 | 0 | 6 | 0 | 0 | logfile |
✘ | 8GRN | 34209 | 2023-10-05 | 2022-09-02 | 2.5 | 3.22 | 2.91 | 3.2 | 0.033 | 3.22 | 177.0 | 0.26 | 23.86 | 0.02 | 1.568 | 20.38 | 36.57 | 14.8 | 77.8 | 7.4 | -5.62 | 0.54 | 0.70 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11602 | 1432 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 8HG3 | 34733 | 2023-10-03 | 2022-11-13 | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7456 | 604 | 6 | 0 | 62 | 0 | 0 | logfile |
✘ | 8HG6 | 34736 | 2023-10-03 | 2022-11-13 | 3.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7259 | 593 | 6 | 0 | 60 | 0 | 0 | logfile |
✘ | 8HW4 | 35050 | 2023-10-05 | 2022-12-28 | 3.52 | 3.89 | 3.62 | 3.8 | 0.033 | 1.39 | 0.0 | 0.17 | 14.97 | 0.01 | 2.142 | 14.67 | 0.09 | 8.2 | 91.8 | 0.0 | -2.38 | 0.67 | 0.80 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10746 | 1364 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 8iFF | 35415 | 2023-10-06 | 2023-02-17 | 3.1 | 3.34 | 3.19 | 3.3 | 0.004 | 0.63 | 0.0 | 0.04 | 18.24 | 0.01 | 2.153 | 9.51 | 0.27 | 5.2 | 94.8 | 0.0 | -0.43 | 0.66 | 0.81 | 1.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13698 | 1736 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 8Gi9 | 40063 | 2023-10-03 | 2023-03-13 | 2.84 | 3.09 | 2.82 | 3.1 | 0.009 | 1.11 | 0.0 | 0.10 | 15.66 | 0.00 | 1.878 | 8.12 | 0.00 | 4.6 | 95.4 | 0.0 | 1.20 | 0.57 | 0.79 | 4.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6852 | 720 | 3 | 0 | 39 | 45 | 0 | logfile |
✘ | 7YMM | 33933 | 2023-10-13 | 2022-07-28 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 136856 | 13220 | 120 | 0 | 788 | 0 | 0 | logfile |