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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8EAo | 27792 | 2023-10-10 | 2022-08-29 | 3.2 | 4.04 | 3.15 | 20.0 | 0.003 | 0.60 | 0.0 | 0.05 | 14.09 | 0.00 | 2.197 | 10.56 | 0.10 | 3.6 | 96.4 | 0.0 | 1.03 | 0.18 | 0.04 | -0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71628 | 8964 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6UMM | 20820 | 2023-10-11 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 11.97 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 6U0M | 20607 | 2023-10-19 | 2019-08-14 | 3.9 | 4.53 | — | 4.3 | 0.005 | 1.05 | 2.0 | 0.06 | 16.74 | 0.01 | 2.211 | 9.80 | 0.47 | 13.2 | 86.7 | 0.2 | -5.28 | 0.81 | 0.63 | -0.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41146 | 5105 | 16 | 34 | 3 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2023-10-11 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 6QoZ | 4610 | 2023-10-09 | 2019-02-13 | 3.4 | 3.65 | 3.13 | 3.5 | 0.011 | 1.46 | 4.0 | 0.09 | 15.40 | 0.01 | 1.243 | 4.20 | 5.13 | 6.0 | 93.1 | 0.9 | -3.28 | 0.40 | 0.62 | 0.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17987 | 2307 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 7CQ7 | 30438 | 2023-10-06 | 2020-08-08 | 3.55 | 3.95 | — | 4.0 | 0.008 | 1.07 | 0.0 | 0.06 | 10.33 | 0.01 | 1.915 | 5.84 | 0.07 | 9.3 | 90.7 | 0.0 | -4.47 | 0.39 | 0.42 | 0.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13810 | 1766 | 8 | 0 | 9 | 0 | 0 | logfile |
✘ | 6RAW | 4785 | 2023-10-19 | 2019-04-08 | 3.7 | 3.80 | 3.66 | 4.1 | 0.007 | 1.29 | 19.0 | 0.13 | 18.21 | 0.01 | 1.198 | 17.63 | 6.37 | 18.9 | 80.8 | 0.3 | -5.55 | 0.47 | 0.49 | 0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39710 | 4877 | 18 | 39 | 6 | 0 | 0 | logfile |
✘ | 4V91 | 2599 | 2023-10-09 | 2014-03-21 | 3.7 | 3.84 | — | 3.8 | 0.133 | 4.77 | 525.0 | 0.43 | 20.66 | 0.07 | 0.695 | 17.94 | 12.79 | 14.1 | 78.2 | 7.8 | -5.39 | 0.33 | 0.36 | 0.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 125665 | 6450 | 45 | 3482 | 0 | 0 | 0 | logfile |
✘ | 6MiX | 9132 | 2023-10-20 | 2018-09-20 | 3.6 | 4.57 | — | 14.0 | 0.007 | 1.19 | 0.0 | 0.07 | 16.40 | 0.01 | 2.212 | 9.79 | 2.30 | 14.6 | 85.0 | 0.4 | -5.69 | -0.03 | 0.00 | 0.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43120 | 5348 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RLJ | 24532 | 2023-10-10 | 2021-07-23 | 3.8 | 4.28 | — | 3.7 | 0.004 | 0.92 | 0.0 | 0.05 | 14.45 | 0.01 | 2.067 | 15.59 | 0.01 | 6.2 | 93.2 | 0.6 | -2.67 | 0.86 | 0.79 | 0.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.32 | — | — | — | 0.87 | 69156 | 8736 | 24 | 0 | 36 | 0 | 0 | logfile |
✘ | 6RBE | 4795 | 2023-10-11 | 2019-04-10 | 3.8 | 3.81 | 4.03 | 5.1 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.38 | 0.09 | 0.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 6EU1 | 3956 | 2023-10-19 | 2017-10-27 | 3.4 | 3.40 | — | 6.6 | 0.005 | 1.14 | 0.0 | 0.06 | 12.93 | 0.01 | 1.732 | 6.52 | 0.50 | 16.1 | 83.5 | 0.4 | -5.70 | 0.20 | 0.01 | 0.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40547 | 5012 | 24 | 43 | 7 | 0 | 0 | logfile |
✘ | 6TB4 | 10438 | 2023-10-19 | 2019-10-31 | 3.8 | 4.42 | 3.85 | 3.8 | 0.008 | 1.08 | 1.0 | 0.06 | 15.27 | 0.01 | 2.044 | 11.25 | 2.05 | 9.8 | 89.5 | 0.8 | -5.38 | 0.70 | 0.55 | 0.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40740 | 5275 | 13 | 0 | 76 | 0 | 0 | logfile |
✘ | 6TM5 | 10518 | 2023-10-06 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.83 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |
✘ | 7WTA | 32773 | 2023-10-10 | 2022-02-04 | 3.9 | 6.12 | — | 3.5 | 0.008 | 0.82 | 0.0 | 0.04 | 13.23 | 0.00 | 2.171 | 19.58 | 0.00 | 8.2 | 91.8 | 0.0 | -0.51 | 0.89 | 0.81 | 0.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21080 | 2736 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 7UFM | 26477 | 2023-10-17 | 2022-03-22 | 3.9 | 2.97 | 4.04 | 1.8 | 0.009 | 1.77 | 14.0 | 0.08 | 22.53 | 0.01 | 1.075 | 9.26 | 24.41 | 11.0 | 89.0 | 0.0 | -4.66 | 0.68 | 0.65 | 0.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36392 | 4354 | 30 | 72 | 14 | 0 | 0 | logfile |
✘ | 7ZNL | 14808 | 2023-10-14 | 2022-04-21 | 3.45 | 3.67 | 3.55 | 3.4 | 0.005 | 0.78 | 0.0 | 0.04 | 11.78 | 0.01 | 2.171 | 7.60 | 6.04 | 6.6 | 93.1 | 0.3 | -2.22 | 0.37 | 0.21 | 0.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 84821 | 11173 | 28 | 0 | 0 | 0 | 0 | logfile |
✘ | 8GNB | 34159 | 2023-10-07 | 2022-08-23 | 3.9 | 5.27 | 4.76 | 5.1 | 0.004 | 0.94 | 0.0 | 0.05 | 12.92 | 0.01 | 2.231 | 14.24 | 0.00 | 5.1 | 94.9 | 0.0 | -0.65 | 0.53 | 0.62 | 0.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15770 | 2010 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 8GA8 | 29892 | 2023-10-10 | 2023-02-22 | 3.5 | 3.70 | 3.49 | 3.7 | 0.003 | 0.54 | 0.0 | 0.04 | 17.43 | 0.00 | 2.028 | 11.33 | 0.33 | 2.6 | 97.4 | 0.0 | 0.98 | 0.70 | 0.69 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22011 | 2675 | 12 | 0 | 2 | 0 | 0 | logfile |
✘ | 7XE0 | 33153 | 2023-10-21 | 2022-03-29 | 3.33 | 3.98 | — | 3.5 | 0.004 | 0.68 | 0.0 | 0.05 | 12.83 | 0.01 | 2.201 | 15.38 | 0.41 | 8.4 | 91.6 | 0.0 | -1.40 | 0.79 | 0.76 | 0.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 49715 | 6160 | 15 | 0 | 5 | 0 | 0 | logfile |