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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6oLL | 20116 | 2023-10-10 | 2019-04-16 | 4.1 | 4.59 | — | 4.4 | 0.004 | 1.05 | 0.0 | 0.06 | 6.94 | 0.01 | 2.400 | 0.40 | 0.00 | 2.0 | 97.8 | 0.2 | -0.51 | 0.67 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10426 | 2114 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 5Lii | 4053 | 2023-10-02 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8GNB | 34159 | 2023-10-07 | 2022-08-23 | 3.9 | 5.27 | 4.76 | 5.1 | 0.004 | 0.94 | 0.0 | 0.05 | 12.92 | 0.01 | 2.231 | 14.24 | 0.00 | 5.1 | 94.9 | 0.0 | -0.65 | 0.53 | 0.62 | 0.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15770 | 2010 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 5WVK | 6694 | 2023-10-20 | 2016-12-25 | 4.2 | 4.73 | — | 4.3 | 0.002 | 0.43 | 0.0 | 0.04 | 7.38 | 0.00 | 2.151 | 7.53 | 0.01 | 6.6 | 93.3 | 0.2 | -3.70 | 0.84 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105261 | 13392 | 47 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CE7 | 16600 | 2023-10-05 | 2023-02-01 | 2.7 | 2.34 | 2.46 | 2.7 | 0.010 | 1.47 | 12.0 | 0.09 | 13.19 | 0.01 | 0.000 | 16.71 | 3.33 | 9.0 | 91.0 | 0.0 | -3.63 | 0.44 | 0.73 | 6.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10512 | 1512 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8GKG | 40183 | 2023-10-08 | 2023-03-18 | 4.38 | 3.94 | 4.39 | 4.9 | 0.002 | 0.54 | 0.0 | 0.04 | 12.43 | 0.00 | 2.293 | 5.72 | 0.00 | 16.3 | 83.5 | 0.2 | -2.00 | 0.45 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17160 | 2700 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 8A7T | 15225 | 2023-10-02 | 2022-06-21 | 3.0 | 2.93 | 3.07 | 3.2 | 0.003 | 0.46 | 0.0 | 0.04 | 8.48 | 0.00 | 2.302 | 5.04 | 0.00 | 2.8 | 97.2 | 0.0 | -4.48 | 0.39 | 0.85 | 4.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3702 | 444 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8PEo | 17633 | 2023-10-06 | 2023-06-14 | 2.69 | 3.21 | 2.84 | 2.7 | 0.005 | 0.77 | 0.0 | 0.05 | 29.93 | 0.01 | 2.201 | 8.09 | 0.14 | 1.9 | 98.1 | 0.0 | 0.99 | 0.92 | 0.88 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12835 | 853 | 12 | 294 | 0 | 0 | 0 | logfile |
✘ | 8EAo | 27792 | 2023-10-10 | 2022-08-29 | 3.2 | 4.04 | 3.15 | 20.0 | 0.003 | 0.60 | 0.0 | 0.05 | 14.09 | 0.00 | 2.197 | 10.56 | 0.10 | 3.6 | 96.4 | 0.0 | 1.03 | 0.18 | 0.04 | -0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71628 | 8964 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 7DBH | 30631 | 2023-10-05 | 2020-10-20 | 3.6 | 4.18 | — | 3.4 | 0.007 | 0.74 | 1.0 | 0.05 | 28.88 | 0.00 | 1.451 | 11.99 | 0.17 | 3.2 | 96.8 | 0.0 | 0.54 | 0.91 | 0.85 | 2.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10631 | 697 | 10 | 252 | 0 | 0 | 0 | logfile |
✘ | 7TXJ | 26159 | 2023-10-18 | 2022-02-09 | 3.9 | 4.24 | — | 4.1 | 0.006 | 0.88 | 0.0 | 0.04 | 17.60 | 0.01 | 1.473 | 20.10 | 0.00 | 6.7 | 92.8 | 0.6 | -1.20 | 0.55 | 0.83 | 1.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97770 | 10560 | 120 | 720 | 0 | 0 | 0 | logfile |
✘ | 5JXL | 8179 | 2023-10-10 | 2016-05-13 | 3.5 | 3.48 | — | 3.6 | 0.008 | 1.39 | 0.0 | 0.06 | 9.65 | 0.00 | 1.795 | 18.18 | 0.15 | 8.7 | 89.0 | 2.2 | -2.06 | 0.30 | 0.77 | 1.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69993 | 9361 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 2XEA | 1730 | 2023-10-05 | 2010-05-12 | 4.6 | 4.10 | — | 4.2 | 0.012 | 2.12 | 0.0 | 0.12 | 20.46 | 0.02 | 1.226 | 2.63 | 3.68 | 8.6 | 90.1 | 1.3 | -3.51 | 0.39 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62671 | 7546 | 98 | 147 | 0 | 0 | 0 | logfile |
✘ | 6U7M | 20673 | 2023-10-18 | 2019-09-03 | 3.8 | 4.00 | — | 4.0 | 0.004 | 0.78 | 0.0 | 0.05 | 9.33 | 0.01 | 2.321 | 2.88 | 0.27 | 8.3 | 91.7 | 0.0 | -4.11 | 0.57 | 0.81 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99420 | 12510 | 30 | 0 | 0 | 0 | 0 | logfile |
✘ | 8AZU | 15772 | 2023-10-11 | 2022-09-06 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.07 | — | — | 4.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23856 | 3108 | 42 | 0 | 0 | 0 | 0 | logfile |
✘ | 6XKJ | 22219 | 2023-10-05 | 2020-06-26 | 3.54 | 3.39 | — | 3.4 | 0.009 | 0.83 | 0.0 | 0.05 | 14.92 | 0.00 | 2.246 | 12.86 | 0.00 | 2.4 | 97.6 | 0.0 | 0.54 | 0.62 | 0.85 | 1.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11056 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ADW | 15372 | 2023-10-03 | 2022-07-11 | 2.95 | 2.93 | 2.87 | 3.0 | 0.009 | 1.46 | 0.0 | 0.07 | 22.42 | 0.01 | 2.469 | 8.01 | 23.33 | 7.7 | 92.3 | 0.0 | -4.02 | 0.51 | 0.80 | 4.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6920 | 990 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 8Do4 | 27590 | 2023-10-10 | 2022-07-12 | 3.2 | 3.38 | 3.21 | 3.5 | 0.005 | 0.81 | 0.0 | 0.05 | 16.40 | 0.00 | 2.056 | 12.09 | 1.54 | 3.4 | 96.6 | 0.0 | -0.40 | 0.69 | 0.68 | 1.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20163 | 2625 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GAQ | 8015 | 2023-10-10 | 2016-01-05 | 3.1 | 3.36 | — | 3.2 | 0.006 | 1.02 | 0.0 | 0.08 | 11.97 | 0.00 | 2.289 | 1.94 | 0.80 | 7.3 | 92.7 | 0.0 | -3.69 | 0.56 | 0.50 | 3.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20574 | 2592 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VFF | 31951 | 2023-10-06 | 2021-09-13 | 4.1 | 3.76 | 3.90 | 4.0 | 0.007 | 0.72 | 0.0 | 0.05 | 13.87 | 0.00 | 2.334 | 2.40 | 0.41 | 3.6 | 96.4 | 0.0 | -0.82 | 0.79 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12579 | 1581 | 3 | 0 | 0 | 0 | 0 | logfile |