Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8C8Y	16495	2024-09-29	2023-01-21	3.03	3.24	3.11	3.1	0.002	0.40	0.0	0.03	22.85	0.00	1.796	4.85	0.00	6.2	93.7	0.1	0.29	0.77	0.81	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77316	2566	25	2667	0	0	0	logfile
✘	5GW4	9540	2024-09-27	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	8FGX	29077	2024-09-25	2022-12-13	2.62	3.60	2.58	3.0	0.003	0.45	0.0	0.04	9.99	0.00	2.400	1.82	0.00	1.6	98.4	0.0	1.41	0.90	0.88	4.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9899	645	4	0	3	0	4873	logfile
✘	8TXR	41704	2024-09-28	2023-08-24	3.8	3.13	—	1.5	0.004	0.46	0.0	0.04	11.55	0.00	1.930	3.65	0.59	1.8	98.2	0.0	0.92	0.88	0.81	1.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19020	2388	20	0	0	0	0	logfile
✘	8J89	36064	2024-09-26	2023-05-01	2.31	3.12	2.39	2.9	0.003	0.46	0.0	0.04	10.98	0.00	2.215	5.85	0.15	3.6	96.4	0.0	0.51	0.82	0.89	4.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12222	1502	2	0	0	0	0	logfile
✘	8QPE	18548	2024-09-25	2023-10-01	3.1	3.23	3.01	3.0	0.002	0.47	0.0	0.11	15.70	0.00	2.202	8.57	0.00	1.9	98.1	0.0	1.39	0.69	0.83	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54566	6251	21	236	1	0	0	logfile
✘	7CKY	30394	2024-09-26	2020-07-20	3.2	3.28	—	3.3	0.003	0.48	0.0	0.04	14.49	0.00	2.154	17.29	1.51	4.3	95.7	0.0	-2.84	0.46	0.50	0.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8128	1038	6	0	2	0	0	logfile
✘	8GEA	29962	2024-09-24	2023-03-06	3.5	3.84	3.59	3.8	0.003	0.48	0.0	0.04	12.73	0.00	2.269	6.68	0.00	2.1	97.9	0.0	1.14	0.69	0.81	2.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6551	902	5	0	1	0	0	logfile
✘	8UBW	42107	2024-09-24	2023-09-25	2.59	3.18	2.61	3.0	0.002	0.48	0.0	0.03	14.62	0.00	2.236	3.93	0.85	1.4	98.6	0.0	3.39	0.70	0.88	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6741	418	2	0	4	38	3343	logfile
✘	7E4i	30986	2024-09-25	2021-02-13	3.05	3.25	—	3.2	0.002	0.48	0.0	0.04	9.90	0.00	2.212	4.54	1.42	3.5	96.5	0.0	0.19	0.70	0.83	2.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11336	1426	6	0	0	0	0	logfile
✘	8QSN	18637	2024-09-23	2023-10-10	3.54	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3579	464	1	0	0	0	0	logfile
✘	6KS6	0758	2024-09-27	2019-08-23	2.99	3.11	—	3.1	0.002	0.49	0.0	0.04	8.47	0.00	2.071	8.81	0.01	3.4	96.4	0.2	-3.34	0.59	0.68	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65514	8502	46	0	46	14	0	logfile
✘	8R64	18946	2024-09-26	2023-11-20	3.2	3.36	3.32	3.3	0.002	0.49	0.0	0.05	11.85	0.00	1.940	4.62	0.29	1.4	98.6	0.0	2.70	0.83	0.85	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13429	1765	13	0	12	0	0	logfile
✘	8FY3	29551	2024-09-24	2023-01-25	2.88	3.13	2.93	3.2	0.003	0.49	0.0	0.04	11.51	0.00	2.186	7.75	2.96	4.1	95.9	0.0	1.07	0.57	0.73	3.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8948	1123	3	0	0	0	0	logfile
✘	7NKQ	12446	2024-09-25	2021-02-18	2.98	3.25	—	3.1	0.004	0.49	0.0	0.04	13.52	0.00	2.018	7.16	0.00	2.7	97.3	0.0	1.39	0.81	0.81	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10621	714	8	0	0	0	5312	logfile
✘	7VX1	32167	2024-09-30	2021-11-12	3.5	2.44	—	3.4	0.002	0.49	1.0	0.04	7.46	0.00	1.753	8.22	0.00	4.3	95.7	0.1	-2.11	0.63	0.59	1.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25362	3237	3	0	0	0	0	logfile
✘	9F43	50182	2024-09-24	2024-04-26	3.49	3.69	3.45	3.7	0.002	0.49	0.0	0.04	14.27	0.00	2.074	5.62	0.21	2.3	97.7	0.0	1.09	0.63	0.77	1.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8465	1061	2	0	0	0	0	logfile
✘	6WQN	21872	2024-09-30	2020-04-29	2.9	2.43	2.85	2.8	0.003	0.49	3.0	0.03	23.04	0.00	1.951	9.03	2.31	2.9	97.1	0.0	-3.39	0.75	0.85	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80700	2646	28	2798	1	0	0	logfile
✘	8P2C	17360	2024-09-29	2023-05-15	2.59	2.23	2.67	2.0	0.003	0.49	0.0	0.04	13.17	0.00	1.935	5.71	2.68	6.8	93.0	0.1	-0.71	0.81	0.80	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21173	2588	8	0	16	0	0	logfile
✘	8GFZ	29989	2024-09-24	2023-03-08	3.0	3.28	3.08	3.3	0.003	0.50	0.0	0.04	13.53	0.00	2.201	2.21	0.00	1.7	98.3	0.0	0.72	0.65	0.88	4.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6744	891	6	0	2	5	0	logfile

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