Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6RJU	4906	2024-09-23	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1992	131	1	0	0	0	997	logfile
✘	7F62	31470	2024-09-23	2021-06-24	3.6	4.33	—	4.1	0.003	0.65	0.0	0.04	13.21	0.00	1.925	19.73	1.38	8.1	91.6	0.2	-2.76	0.66	0.62	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3321	427	3	0	0	0	0	logfile
✘	7LUM	23522	2024-09-27	2021-02-22	4.5	4.68	—	4.6	0.007	0.85	0.0	0.05	14.02	0.00	1.970	26.15	0.00	7.5	92.3	0.2	-0.70	0.79	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63978	8374	16	0	0	0	0	logfile
✘	7RWA	24712	2024-09-27	2021-08-19	4.7	5.66	4.89	4.6	0.003	0.89	0.0	0.05	5.84	0.00	1.914	2.65	0.00	5.8	93.7	0.5	-0.12	0.84	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16158	3244	10	0	0	0	0	logfile
✘	6LQH	0945	2024-09-27	2020-01-13	2.94	3.06	2.73	3.0	0.008	0.83	0.0	0.05	17.09	0.00	2.268	12.84	9.05	9.3	90.7	0.0	-2.73	0.72	0.85	3.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16623	2160	18	0	0	0	0	logfile
✘	7V7E	31768	2024-09-30	2021-08-21	2.9	3.84	—	3.2	0.004	0.62	0.0	0.05	14.06	0.00	2.106	7.79	0.00	5.0	95.0	0.1	-0.18	0.87	0.84	2.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25340	3093	40	0	82	0	0	logfile
✘	7KR5	23002	2024-09-25	2020-11-18	3.3	3.93	—	3.9	0.004	0.57	0.0	0.04	12.42	0.00	2.197	12.00	0.77	5.0	95.0	0.0	-0.04	0.59	0.75	2.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10534	1438	13	0	1	0	0	logfile
✘	7E4i	30986	2024-09-25	2021-02-13	3.05	3.25	—	3.2	0.002	0.48	0.0	0.04	9.90	0.00	2.212	4.54	1.42	3.5	96.5	0.0	0.19	0.70	0.83	2.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11336	1426	6	0	0	0	0	logfile
✘	7YG4	33807	2024-09-24	2022-07-11	3.1	3.38	3.15	3.3	0.003	0.58	0.0	0.04	15.98	0.00	2.147	7.09	0.00	3.3	96.7	0.0	0.41	0.75	0.81	1.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7510	953	3	0	0	0	0	logfile
✘	7URC	26708	2024-09-23	2022-04-21	3.14	3.74	3.25	3.6	0.018	1.00	0.0	0.88	25.59	0.00	2.248	10.09	0.00	3.5	96.5	0.0	-3.02	0.58	0.86	3.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5561	658	4	0	12	0	0	logfile
✘	8DZG	27797	2024-09-28	2022-08-07	3.1	3.44	3.21	3.5	0.008	0.73	0.0	0.04	16.80	0.00	2.076	2.92	0.29	4.8	95.0	0.2	-0.15	0.67	0.79	3.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19758	2520	12	0	18	0	0	logfile
✘	8A3B	15110	2024-09-26	2022-06-07	3.1	2.31	2.85	2.9	0.003	0.55	0.0	0.03	14.17	0.00	2.091	4.59	0.00	0.9	99.1	0.0	2.21	0.73	0.72	2.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14448	1792	7	0	0	0	0	logfile
✘	7VUG	32127	2024-09-25	2021-11-02	3.2	2.20	—	2.0	0.004	0.61	0.0	0.04	13.56	0.00	2.099	11.94	0.00	6.3	93.7	0.0	-0.75	0.73	0.72	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8924	1127	6	0	1	0	0	logfile
✘	6S6T	10105	2024-09-25	2019-07-03	4.1	4.22	4.17	4.1	0.024	0.98	0.0	0.08	13.05	0.00	1.163	8.26	0.02	5.6	94.4	0.0	-3.19	0.74	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56543	7304	14	0	17	0	0	logfile
✘	6WKW	21811	2024-09-25	2020-04-17	3.6	3.75	—	3.6	0.017	1.19	0.0	0.06	15.79	0.00	2.066	12.81	0.52	12.6	87.3	0.2	-5.89	0.87	0.91	3.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10037	1319	8	0	4	0	0	logfile
✘	7EUo	31323	2024-09-25	2021-05-18	2.9	3.61	2.97	3.5	0.004	0.65	0.0	0.05	13.72	0.00	2.198	6.82	0.00	4.3	95.7	0.0	-0.21	0.63	0.82	3.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8950	1138	7	0	2	0	0	logfile
✘	6M5R	30090	2024-09-25	2020-03-11	3.5	3.68	—	3.6	0.005	0.77	2.0	0.05	15.65	0.00	2.015	11.54	5.29	9.2	90.7	0.1	-3.65	0.61	0.80	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11055	1440	4	0	2	0	0	logfile
✘	6RQJ	4983	2024-09-27	2019-05-15	3.5	4.14	3.49	3.7	0.006	0.74	0.0	0.11	14.35	0.00	2.041	11.05	0.06	6.9	92.9	0.2	-4.28	0.84	0.75	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14971	1899	6	0	2	0	0	logfile
✘	8H8J	34549	2024-09-24	2022-10-23	3.2	2.26	3.27	2.1	0.003	0.66	0.0	0.04	10.44	0.00	1.939	9.85	2.59	2.3	97.6	0.1	-0.78	0.71	0.72	2.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8842	1139	6	0	5	0	0	logfile
✘	7W0M	32244	2024-09-25	2021-11-18	3.71	2.51	3.74	2.2	0.004	0.76	0.0	0.05	14.11	0.00	2.230	11.46	0.00	5.6	94.4	0.0	-1.90	0.73	0.74	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8929	1134	6	0	1	0	0	logfile

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