Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5GW4	9540	2024-09-27	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	8QSN	18637	2024-09-23	2023-10-10	3.54	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3579	464	1	0	0	0	0	logfile
✘	8QPE	18548	2024-09-25	2023-10-01	3.1	3.23	3.01	3.0	0.002	0.47	0.0	0.11	15.70	0.00	2.202	8.57	0.00	1.9	98.1	0.0	1.39	0.69	0.83	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54566	6251	21	236	1	0	0	logfile
✘	7VX1	32167	2024-09-30	2021-11-12	3.5	2.44	—	3.4	0.002	0.49	1.0	0.04	7.46	0.00	1.753	8.22	0.00	4.3	95.7	0.1	-2.11	0.63	0.59	1.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25362	3237	3	0	0	0	0	logfile
✘	7XNo	33321	2024-09-27	2022-04-29	2.54	2.96	2.54	2.8	0.002	0.53	0.0	0.04	12.89	0.00	2.215	5.72	0.12	4.5	95.4	0.1	1.92	0.69	0.85	3.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15888	2085	15	0	3	0	0	logfile
✘	8JMM	36423	2024-09-28	2023-06-05	3.75	8.01	3.82	3.2	0.002	0.50	0.0	0.04	8.68	0.00	2.196	6.60	3.80	3.7	96.3	0.0	-3.47	0.68	0.41	0.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70631	9100	18	0	0	0	0	logfile
✘	8R64	18946	2024-09-26	2023-11-20	3.2	3.36	3.32	3.3	0.002	0.49	0.0	0.05	11.85	0.00	1.940	4.62	0.29	1.4	98.6	0.0	2.70	0.83	0.85	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13429	1765	13	0	12	0	0	logfile
✘	5GW5	9541	2024-09-26	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.87	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	8HC5	34652	2024-09-26	2022-11-01	3.43	3.51	3.37	3.6	0.002	0.53	0.0	0.04	15.56	0.00	2.249	5.34	0.00	4.0	96.0	0.0	-0.79	0.60	0.59	1.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11400	1493	6	0	1	0	0	logfile
✘	7E4i	30986	2024-09-25	2021-02-13	3.05	3.25	—	3.2	0.002	0.48	0.0	0.04	9.90	0.00	2.212	4.54	1.42	3.5	96.5	0.0	0.19	0.70	0.83	2.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11336	1426	6	0	0	0	0	logfile
✘	8UBW	42107	2024-09-24	2023-09-25	2.59	3.18	2.61	3.0	0.002	0.48	0.0	0.03	14.62	0.00	2.236	3.93	0.85	1.4	98.6	0.0	3.39	0.70	0.88	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6741	418	2	0	4	38	3343	logfile
✘	8iZ9	35836	2024-09-25	2023-04-06	2.95	3.38	3.07	3.3	0.002	0.56	0.0	0.04	14.57	0.01	2.273	7.52	0.00	2.4	97.6	0.0	-0.94	0.52	0.61	0.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9779	1224	2	0	1	0	0	logfile
✘	8C8Y	16495	2024-09-29	2023-01-21	3.03	3.24	3.11	3.1	0.002	0.40	0.0	0.03	22.85	0.00	1.796	4.85	0.00	6.2	93.7	0.1	0.29	0.77	0.81	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77316	2566	25	2667	0	0	0	logfile
✘	8F7C	28902	2024-09-27	2022-11-18	3.92	4.16	3.93	4.2	0.002	0.52	0.0	0.04	13.95	0.00	1.675	4.95	0.00	3.2	96.8	0.0	0.02	0.64	0.82	2.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15925	2009	7	0	0	0	0	logfile
✘	6RKV	4912	2024-09-27	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	13.18	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15460	1784	8	64	0	0	0	logfile
✘	9F43	50182	2024-09-24	2024-04-26	3.49	3.69	3.45	3.7	0.002	0.49	0.0	0.04	14.27	0.00	2.074	5.62	0.21	2.3	97.7	0.0	1.09	0.63	0.77	1.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8465	1061	2	0	0	0	0	logfile
✘	7C8K	30306	2024-09-24	2020-06-02	3.2	3.18	—	3.1	0.002	0.51	0.0	0.05	13.49	0.00	2.001	4.88	0.00	3.2	96.8	0.0	-1.52	0.82	0.78	2.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4853	596	3	0	6	0	0	logfile
✘	7LB8	23251	2024-09-25	2021-01-07	3.4	3.48	—	3.5	0.002	0.62	1.0	0.04	14.95	0.00	2.093	9.76	2.66	4.7	95.0	0.3	-1.98	0.58	0.72	1.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10439	1405	4	0	0	0	0	logfile
✘	6KS6	0758	2024-09-27	2019-08-23	2.99	3.11	—	3.1	0.002	0.49	0.0	0.04	8.47	0.00	2.071	8.81	0.01	3.4	96.4	0.2	-3.34	0.59	0.68	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65514	8502	46	0	46	14	0	logfile
✘	8DP0	27627	2024-09-24	2022-07-14	2.96	3.56	—	3.4	0.002	0.50	0.0	0.04	13.31	0.00	2.213	5.91	0.00	2.5	97.5	0.0	1.09	0.77	0.70	0.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8894	1104	2	0	0	0	0	logfile

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