Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7A6B	11669	2024-09-29	2020-08-25	1.33	1.21	—	1.3	0.015	1.60	24.0	0.12	16.78	0.01	1.893	4.97	4.17	1.2	98.8	0.0	2.52	0.52	0.65	9.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41494	4152	72	0	32	3854	0	logfile
✘	8P6X	17510	2024-09-23	2023-05-30	1.9	1.85	1.92	1.9	0.005	0.63	0.0	0.04	16.39	0.00	2.211	7.57	0.72	2.3	97.6	0.2	1.71	0.68	0.78	5.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5284	631	7	0	2	144	0	logfile
✘	8BQV	16188	2024-09-24	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✘	8BC3	15961	2024-09-27	2022-10-14	2.1	2.00	2.14	2.2	0.014	1.93	0.0	0.10	18.17	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.84	5.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16880	2170	30	0	10	500	0	logfile
✘	8FoZ	29357	2024-09-29	2023-01-03	2.0	2.03	2.09	2.0	0.009	0.92	0.0	0.06	15.79	0.01	2.238	2.94	1.31	0.5	99.5	0.0	0.22	0.80	0.91	7.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23648	3072	16	0	16	0	0	logfile
✘	8Q8S	18259	2024-09-25	2023-08-18	2.68	2.07	2.67	2.3	0.011	2.11	3.0	0.10	9.52	0.01	2.513	0.47	0.00	7.2	92.8	0.0	-1.68	0.30	0.74	5.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10611	684	9	0	0	0	5409	logfile
✘	8DZP	27804	2024-09-24	2022-08-08	2.71	2.09	2.70	1.9	0.004	0.68	0.0	0.05	13.62	0.01	2.216	5.26	0.11	3.6	96.4	0.0	-0.46	0.78	0.78	3.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8657	1120	6	0	1	0	0	logfile
✘	9AVG	43901	2024-09-27	2024-03-02	3.6	2.11	—	1.8	0.005	0.69	0.0	0.04	12.94	0.01	2.112	8.93	0.00	3.2	96.8	0.0	-0.83	0.76	0.75	2.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17498	2210	13	0	25	0	0	logfile
✘	8BQW	16189	2024-09-27	2023-01-18	2.3	2.12	2.14	2.2	0.008	1.14	0.0	0.07	8.96	0.00	0.052	12.77	0.00	9.6	90.4	0.0	-3.78	0.46	0.75	7.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17385	2310	90	0	270	135	0	logfile
✘	8JHY	36300	2024-09-25	2023-05-25	2.87	2.15	—	2.8	0.007	0.96	0.0	0.05	13.90	0.01	2.078	10.20	0.00	5.7	94.3	0.0	-2.25	0.75	0.77	3.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9073	1144	6	0	2	0	0	logfile
✘	7N5G	24189	2024-09-23	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2926	371	2	0	1	0	0	logfile
✘	7EZM	31389	2024-09-24	2021-06-01	2.9	2.20	—	2.0	0.011	1.07	1.0	0.07	13.16	0.01	2.228	4.78	0.94	3.8	96.2	0.0	-0.87	0.76	0.76	3.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9008	1171	6	0	0	0	0	logfile
✘	7VUG	32127	2024-09-25	2021-11-02	3.2	2.20	—	2.0	0.004	0.61	0.0	0.04	13.56	0.00	2.099	11.94	0.00	6.3	93.7	0.0	-0.75	0.73	0.72	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8924	1127	6	0	1	0	0	logfile
✘	6XS6	22301	2024-09-28	2020-07-15	3.7	2.21	—	2.2	0.004	0.83	0.0	0.05	14.26	0.01	2.240	4.49	0.00	6.1	93.9	0.0	-1.99	0.57	0.59	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18294	2357	3	0	0	0	0	logfile
✘	8KFX	37207	2024-09-24	2023-08-16	2.96	2.23	3.09	2.0	0.004	0.61	0.0	0.04	16.55	0.00	2.189	11.28	0.51	2.5	97.5	0.0	0.90	0.79	0.79	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9001	1139	6	0	1	0	0	logfile
✘	8P2C	17360	2024-09-29	2023-05-15	2.59	2.23	2.67	2.0	0.003	0.49	0.0	0.04	13.17	0.00	1.935	5.71	2.68	6.8	93.0	0.1	-0.71	0.81	0.80	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21173	2588	8	0	16	0	0	logfile
✘	8U63	41942	2024-09-24	2023-09-13	3.01	2.25	2.99	2.0	0.003	0.56	0.0	0.04	17.94	0.00	2.151	8.88	0.48	2.8	97.2	0.0	-0.74	0.77	0.79	2.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7758	984	4	0	2	0	0	logfile
✘	8H8J	34549	2024-09-24	2022-10-23	3.2	2.26	3.27	2.1	0.003	0.66	0.0	0.04	10.44	0.00	1.939	9.85	2.59	2.3	97.6	0.1	-0.78	0.71	0.72	2.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8842	1139	6	0	5	0	0	logfile
✘	8JZ7	36736	2024-09-25	2023-07-04	2.6	2.26	—	1.9	0.006	0.85	0.0	0.05	13.85	0.01	2.197	15.42	0.61	7.0	93.0	0.0	-2.16	0.75	0.73	2.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9042	1144	6	0	1	0	0	logfile
✘	7UZE	26886	2024-09-27	2022-05-09	2.4	2.27	2.42	2.3	0.003	0.58	0.0	0.04	14.97	0.00	2.040	3.56	0.68	3.0	96.6	0.4	1.69	0.66	0.87	6.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15105	988	12	0	4	113	7528	logfile

• Page 1 of 34
• next →