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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5VLZ | 8709 | 2023-11-21 | 2017-04-26 | 4.4 | 4.55 | — | 4.4 | 0.006 | 0.89 | 0.0 | 0.00 | 5.88 | 0.00 | 2.272 | 2.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.92 | 0.80 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 96897 | 24179 | 181 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BF8 | 16016 | 2023-11-13 | 2022-10-24 | 2.8 | 3.14 | 2.80 | 3.1 | 0.003 | 0.47 | 0.0 | 0.03 | 13.85 | 0.00 | 2.203 | 8.73 | 0.93 | 2.7 | 97.3 | 0.0 | 0.92 | 0.64 | 0.76 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4686 | 302 | 2 | 111 | 0 | 0 | 0 | logfile |
✘ | 7V9C | 31815 | 2023-11-18 | 2021-08-24 | 4.5 | 3.01 | 4.36 | 3.5 | 0.002 | 0.44 | 0.0 | 0.03 | 28.95 | 0.00 | 2.240 | 8.56 | 1.27 | 5.0 | 94.1 | 0.9 | -0.37 | 0.60 | 0.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23228 | 1518 | 18 | 546 | 0 | 0 | 0 | logfile |
✘ | 7NAF | 24271 | 2023-11-17 | 2021-06-21 | 3.13 | 3.14 | 3.06 | 3.1 | 0.005 | 0.62 | 0.0 | 0.03 | 15.44 | 0.01 | 2.172 | 7.07 | 0.00 | 4.2 | 95.8 | 0.0 | 0.43 | 0.70 | 0.78 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18868 | 1342 | 17 | 378 | 0 | 2 | 0 | logfile |
✘ | 7M4W | 23668 | 2023-11-20 | 2021-03-22 | 2.55 | 1.74 | — | 1.6 | 0.006 | 0.55 | 0.0 | 0.03 | 15.03 | 0.01 | 1.760 | 3.08 | 0.02 | 2.8 | 97.0 | 0.2 | 1.38 | 0.77 | 0.74 | 3.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 137923 | 5518 | 76 | 4373 | 195 | 797 | 0 | logfile |
✘ | 6SWA | 10321 | 2023-11-20 | 2019-09-20 | 3.1 | 3.53 | — | 3.4 | 0.002 | 0.45 | 0.0 | 0.03 | 13.70 | 0.00 | 1.115 | 10.82 | 0.43 | 4.2 | 95.6 | 0.2 | -2.39 | 0.68 | 0.83 | 2.07 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138160 | 6739 | 60 | 3888 | 250 | 0 | 0 | logfile |
✘ | 6K3o | 9910 | 2023-11-20 | 2019-05-21 | 3.4 | 3.86 | — | 3.8 | 0.003 | 0.56 | 0.0 | 0.03 | 14.46 | 0.00 | 1.077 | 16.09 | 0.00 | 3.8 | 96.2 | 0.0 | -1.52 | 0.79 | 0.82 | 3.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31508 | 3790 | 48 | 0 | 36 | 0 | 0 | logfile |
✘ | 6V3D | 21033 | 2023-11-20 | 2019-11-25 | 2.95 | 3.39 | — | 3.2 | 0.002 | 0.52 | 0.0 | 0.03 | 14.54 | 0.02 | 1.698 | 5.91 | 0.04 | 2.8 | 97.1 | 0.1 | -1.93 | 0.85 | 0.86 | 2.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 89040 | 3117 | 45 | 3007 | 108 | 231 | 0 | logfile |
✘ | 7UVW | 26818 | 2023-11-20 | 2022-05-02 | 2.37 | 2.60 | — | 2.5 | 0.005 | 0.65 | 1.0 | 0.04 | 15.61 | 0.02 | 2.091 | 4.76 | 2.30 | 2.6 | 97.2 | 0.1 | 0.61 | 0.91 | 0.91 | 4.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138233 | 5512 | 54 | 4442 | 1 | 0 | 0 | logfile |
✘ | 7VNJ | 32041 | 2023-11-20 | 2021-10-11 | 2.56 | 2.25 | — | 2.5 | 0.003 | 0.52 | 0.0 | 0.04 | 13.80 | 0.00 | 2.166 | 5.63 | 0.40 | 5.0 | 95.0 | 0.0 | -0.46 | 0.69 | 0.78 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30661 | 3856 | 15 | 0 | 21 | 0 | 0 | logfile |
✘ | 7DCC | 30635 | 2023-11-21 | 2020-10-24 | 4.3 | 4.77 | — | 4.1 | 0.002 | 0.48 | 0.0 | 0.04 | 7.38 | 0.00 | 2.279 | 3.10 | 1.39 | 2.3 | 97.7 | 0.0 | -4.06 | 0.73 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35019 | 4485 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 7oE7 | 12861 | 2023-11-15 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 7R8B | 24314 | 2023-11-15 | 2021-06-26 | 3.1 | 3.48 | — | 3.3 | 0.002 | 0.55 | 0.0 | 0.04 | 13.48 | 0.00 | 2.103 | 6.66 | 1.94 | 3.5 | 96.5 | 0.0 | -1.73 | 0.67 | 0.85 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10868 | 1371 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 8A1U | 15089 | 2023-11-20 | 2022-06-02 | 2.86 | 2.69 | 2.74 | 2.8 | 0.004 | 0.56 | 0.0 | 0.04 | 15.92 | 0.00 | 2.034 | 3.69 | 0.71 | 1.7 | 98.3 | 0.0 | 1.90 | 0.57 | 0.72 | 2.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29956 | 1898 | 17 | 0 | 17 | 187 | 14698 | logfile |
✘ | 7oQH | 12701 | 2023-11-16 | 2021-06-03 | 3.32 | 3.46 | 3.31 | 3.4 | 0.004 | 0.62 | 0.0 | 0.04 | 13.63 | 0.01 | 1.967 | 11.39 | 0.00 | 6.5 | 93.5 | 0.0 | -0.13 | 0.72 | 0.79 | 0.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16824 | 2169 | 12 | 0 | 11 | 0 | 0 | logfile |
✘ | 8A1Y | 15093 | 2023-11-20 | 2022-06-02 | 3.3 | 3.70 | 3.51 | 3.7 | 0.004 | 0.54 | 0.0 | 0.04 | 15.64 | 0.00 | 2.049 | 3.87 | 0.06 | 2.0 | 98.0 | 0.0 | 1.28 | 0.59 | 0.75 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30045 | 1920 | 11 | 0 | 14 | 0 | 14864 | logfile |
✘ | 8DCX | 27330 | 2023-11-14 | 2022-06-17 | 2.8 | 3.32 | 3.33 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 14.71 | 0.00 | 2.195 | 13.47 | 0.00 | 5.4 | 94.6 | 0.1 | -0.04 | 0.48 | 0.60 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9627 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XJZ | 33238 | 2023-11-14 | 2022-04-19 | 3.9 | 4.23 | 3.91 | 4.0 | 0.004 | 0.59 | 0.0 | 0.04 | 12.64 | 0.00 | 2.218 | 6.48 | 3.13 | 4.2 | 95.8 | 0.0 | -1.22 | 0.83 | 0.84 | 1.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9276 | 983 | 2 | 72 | 1 | 0 | 0 | logfile |
✘ | 7VGS | 31978 | 2023-11-16 | 2021-09-18 | 2.8 | 3.28 | — | 3.3 | 0.002 | 0.66 | 0.0 | 0.04 | 12.19 | 0.01 | 2.230 | 9.89 | 0.38 | 7.0 | 93.0 | 0.0 | -1.16 | 0.67 | 0.75 | 2.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9700 | 1254 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ERT | 28560 | 2023-11-20 | 2022-10-12 | 3.3 | 3.67 | 3.52 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 14.14 | 0.01 | 2.203 | 10.41 | 0.00 | 8.1 | 91.9 | 0.1 | 0.22 | 0.70 | 0.81 | 1.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16359 | 1995 | 21 | 0 | 0 | 0 | 0 | logfile |