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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7YPQ | 34011 | 2023-11-13 | 2022-08-04 | 3.1 | 3.22 | 2.15 | 3.2 | 0.005 | 0.63 | 0.0 | 0.05 | 17.29 | 0.00 | 2.261 | 7.93 | 0.00 | 2.2 | 97.8 | 0.0 | -0.66 | 0.52 | 0.79 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2915 | 327 | 2 | 11 | 0 | 0 | 0 | logfile |
✘ | 7N62 | 24192 | 2023-11-13 | 2021-06-07 | 4.0 | 3.42 | — | 3.9 | 0.006 | 0.82 | 0.0 | 0.05 | 13.98 | 0.01 | 2.203 | 21.20 | 0.00 | 14.9 | 85.1 | 0.0 | -2.74 | 0.73 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5613 | 712 | 4 | 0 | 5 | 0 | 0 | logfile |
✘ | 6NT5 | 0502 | 2023-11-13 | 2019-01-28 | 4.1 | 4.28 | — | 4.1 | 0.006 | 0.93 | 0.0 | 0.05 | 10.32 | 0.01 | 2.300 | 3.59 | 0.41 | 4.7 | 95.3 | 0.0 | -2.40 | 0.73 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4586 | 584 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 8A01 | 15044 | 2023-11-13 | 2022-05-26 | 3.2 | 3.25 | 3.20 | 3.2 | 0.002 | 0.44 | 0.0 | 0.05 | 14.81 | 0.00 | 2.289 | 4.13 | 0.00 | 2.0 | 98.0 | 0.0 | 0.02 | 0.48 | 0.86 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5511 | 717 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RAV | 24387 | 2023-11-13 | 2021-07-02 | 3.3 | 2.69 | 3.21 | 2.4 | 0.004 | 0.93 | 0.0 | 0.05 | 15.84 | 0.01 | 2.224 | 16.68 | 1.17 | 16.7 | 82.9 | 0.4 | -3.36 | 0.72 | 0.71 | 2.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6215 | 773 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 8HF2 | 34710 | 2023-11-13 | 2022-11-09 | 4.14 | 5.08 | 4.11 | 4.8 | 0.012 | 1.04 | 0.0 | 0.05 | 14.20 | 0.00 | 2.264 | 15.84 | 0.00 | 5.1 | 94.9 | 0.0 | -4.39 | 0.57 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4660 | 600 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7NKZ | 12451 | 2023-11-13 | 2021-02-19 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6424 | 792 | 4 | 0 | 5 | 42 | 0 | logfile |
✘ | 8B4o | 15851 | 2023-11-13 | 2022-09-20 | 2.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6156 | 772 | 2 | 0 | 3 | 0 | 0 | logfile |
✘ | 6Po1 | 20406 | 2023-11-13 | 2019-07-03 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53244 | 3407 | 20 | 0 | 18 | 0 | 26717 | logfile |
✘ | 6PoD | 20412 | 2023-11-13 | 2019-07-03 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53637 | 3427 | 20 | 0 | 25 | 0 | 26898 | logfile |
✘ | 7D1T | 30547 | 2023-11-13 | 2020-09-15 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52994 | 5312 | 108 | 0 | 196 | 2432 | 0 | logfile |
✘ | 7Y7W | 33672 | 2023-11-13 | 2022-06-22 | 2.4 | 2.70 | 2.46 | 2.7 | 0.006 | 0.78 | 0.0 | 0.08 | 17.46 | 0.00 | 1.907 | 5.88 | 1.11 | 3.0 | 97.0 | 0.0 | 0.06 | 0.68 | 0.85 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4310 | 529 | 1 | 0 | 7 | 48 | 0 | logfile |
✘ | 7FiL | 31602 | 2023-11-13 | 2021-07-31 | 3.0 | 2.84 | — | 3.6 | 0.008 | 1.05 | 2.0 | 0.06 | 18.46 | 0.01 | 2.213 | 19.35 | 8.76 | 7.7 | 91.1 | 1.2 | -1.82 | 0.71 | 0.75 | 1.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3993 | 504 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Ji3 | 22343 | 2023-11-13 | 2020-07-22 | 3.46 | 4.28 | — | 4.0 | 0.005 | 0.79 | 0.0 | 0.05 | 13.46 | 0.01 | 2.365 | 6.77 | 0.00 | 3.6 | 96.4 | 0.0 | -5.13 | 0.64 | 0.72 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6000 | 777 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7D5i | 30582 | 2023-11-13 | 2020-09-26 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6232 | 793 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 7P14 | 13155 | 2023-11-13 | 2021-07-01 | 3.66 | 3.82 | 3.50 | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 16.56 | 0.00 | 2.295 | 7.45 | 0.00 | 2.7 | 97.3 | 0.0 | 1.11 | 0.60 | 0.78 | 2.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3796 | 454 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 7DGR | 30674 | 2023-11-13 | 2020-11-12 | 4.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 107305 | 13811 | 102 | 0 | 37 | 0 | 0 | logfile |
✘ | 6UKN | 20807 | 2023-11-13 | 2019-10-05 | 3.65 | 3.85 | — | 3.8 | 0.005 | 0.83 | 0.0 | 0.05 | 13.77 | 0.01 | 2.280 | 4.10 | 0.47 | 7.7 | 92.3 | 0.0 | -2.59 | 0.70 | 0.82 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4109 | 536 | 4 | 0 | 8 | 0 | 0 | logfile |
✘ | 7PD3 | 13329 | 2023-11-13 | 2021-08-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108076 | 9276 | 76 | 1522 | 125 | 0 | 0 | logfile |
✘ | 7SWP | 25478 | 2023-11-13 | 2021-11-20 | 3.8 | 3.74 | — | 4.0 | 0.008 | 0.92 | 0.0 | 0.05 | 12.87 | 0.01 | 2.202 | 40.14 | 0.00 | 12.1 | 87.9 | 0.0 | -2.17 | 0.51 | 0.71 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3372 | 436 | 3 | 0 | 0 | 0 | 0 | logfile |