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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8CU8 | 26996 | 2023-11-21 | 2022-05-16 | 1.91 | 2.52 | 1.91 | 2.2 | 0.005 | 0.65 | 0.0 | 0.05 | 13.91 | 0.01 | 2.043 | 0.74 | 0.00 | 0.6 | 99.4 | 0.0 | 1.28 | 0.87 | 0.93 | 5.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35271 | 4032 | 72 | 0 | 24 | 2271 | 0 | logfile |
✘ | 6SHT | 10205 | 2023-11-22 | 2019-08-08 | 2.73 | 2.88 | 2.75 | 2.8 | 0.015 | 1.55 | 0.0 | 0.07 | 19.28 | 0.01 | 0.000 | 7.75 | 5.56 | 0.6 | 98.8 | 0.6 | -2.82 | 0.81 | 0.91 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37152 | 4176 | 24 | 0 | 48 | 1728 | 0 | logfile |
✘ | 7PBS | 13301 | 2023-11-20 | 2021-08-02 | 3.3 | 2.55 | — | 3.2 | 0.005 | 0.71 | 0.0 | 0.05 | 14.69 | 0.01 | 1.778 | 1.66 | 0.25 | 0.7 | 99.3 | 0.0 | -0.18 | 0.65 | 0.77 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31328 | 1918 | 15 | 30 | 11 | 0 | 15439 | logfile |
✘ | 6VFH | 21172 | 2023-11-22 | 2020-01-05 | 3.86 | 3.96 | 3.81 | 3.9 | 0.019 | 1.39 | 0.0 | 0.08 | 9.31 | 0.01 | 2.497 | 0.82 | 0.00 | 0.8 | 99.2 | 0.0 | 2.06 | 0.75 | 0.80 | 1.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36984 | 4752 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8F0A | 28754 | 2023-11-17 | 2022-11-02 | 2.6 | 3.77 | 2.61 | 3.4 | 0.031 | 1.77 | 0.0 | 0.13 | 9.86 | 0.01 | 2.388 | 0.56 | 0.00 | 0.8 | 99.2 | 0.0 | 0.72 | 0.68 | 0.66 | 4.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18060 | 1212 | 9 | 0 | 0 | 0 | 9189 | logfile |
✘ | 6VL6 | 21231 | 2023-11-18 | 2020-01-22 | 4.6 | 5.00 | 4.54 | 4.6 | 0.019 | 1.46 | 0.0 | 0.09 | 11.38 | 0.01 | 2.431 | 0.59 | 0.00 | 0.9 | 99.1 | 0.0 | 0.45 | 0.87 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21504 | 2640 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Fii | 31598 | 2023-11-14 | 2021-07-31 | 4.3 | 4.37 | — | 4.1 | 0.002 | 0.36 | 0.0 | 0.04 | 8.97 | 0.00 | 2.073 | 1.66 | 0.00 | 0.9 | 99.1 | 0.0 | 3.08 | 0.64 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8765 | 1522 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VWK | 21419 | 2023-11-14 | 2020-02-20 | 3.3 | 3.56 | — | 3.5 | 0.010 | 1.30 | 4.0 | 0.07 | 12.71 | 0.01 | 2.355 | 0.98 | 0.59 | 0.9 | 99.1 | 0.0 | -0.35 | 0.65 | 0.83 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8423 | 1133 | 13 | 0 | 0 | 0 | 0 | logfile |
✘ | 6KNG | 0731 | 2023-11-14 | 2019-08-05 | 2.85 | 3.15 | — | 3.1 | 0.005 | 0.65 | 0.0 | 0.05 | 14.34 | 0.00 | 2.093 | 4.97 | 3.68 | 0.9 | 99.1 | 0.0 | -2.31 | 0.83 | 0.91 | 4.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7749 | 1002 | 6 | 0 | 6 | 0 | 0 | logfile |
✘ | 7UNL | 26626 | 2023-11-15 | 2022-04-11 | 2.45 | 3.35 | 2.50 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 14.66 | 0.00 | 2.143 | 2.41 | 1.94 | 1.1 | 98.9 | 0.0 | 2.30 | 0.72 | 0.83 | 3.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11724 | 734 | 6 | 0 | 8 | 120 | 5900 | logfile |
✘ | 6TZ5 | 20589 | 2023-11-21 | 2019-08-10 | 3.1 | 3.56 | 3.05 | 3.7 | 0.003 | 0.51 | 0.0 | 0.04 | 14.11 | 0.00 | 2.220 | 7.23 | 0.00 | 1.1 | 98.9 | 0.0 | 0.24 | 0.40 | 0.55 | -0.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93500 | 12104 | 68 | 0 | 0 | 0 | 0 | logfile |
✘ | 8A1W | 15091 | 2023-11-20 | 2022-06-02 | 2.56 | 2.20 | 2.53 | 2.4 | 0.004 | 0.56 | 0.0 | 0.04 | 15.09 | 0.00 | 2.014 | 2.96 | 0.32 | 1.1 | 98.9 | 0.0 | 1.65 | 0.60 | 0.72 | 3.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30172 | 1908 | 16 | 0 | 16 | 289 | 14776 | logfile |
✘ | 7D4P | 30575 | 2023-11-18 | 2020-09-24 | 2.7 | 3.03 | 2.86 | 3.0 | 0.007 | 0.80 | 0.0 | 0.04 | 13.57 | 0.00 | 2.269 | 4.62 | 0.67 | 1.2 | 98.8 | 0.0 | 2.42 | 0.58 | 0.76 | 3.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22472 | 2676 | 8 | 0 | 28 | 0 | 0 | logfile |
✘ | 7L8G | 23233 | 2023-11-16 | 2020-12-31 | 4.3 | 4.35 | 4.01 | 4.1 | 0.022 | 1.76 | 0.0 | 0.16 | 10.27 | 0.02 | 2.354 | 1.35 | 0.00 | 1.2 | 98.8 | 0.0 | 0.64 | 0.79 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15802 | 1695 | 39 | 0 | 307 | 0 | 0 | logfile |
✘ | 6VL5 | 21230 | 2023-11-16 | 2020-01-22 | 4.5 | 4.57 | 4.20 | 4.4 | 0.019 | 1.72 | 0.0 | 0.10 | 10.23 | 0.01 | 2.242 | 0.64 | 0.20 | 1.2 | 98.8 | 0.0 | 0.88 | 0.79 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15039 | 1719 | 42 | 0 | 105 | 0 | 0 | logfile |
✘ | 7PBL | 13294 | 2023-11-20 | 2021-08-02 | 3.2 | 3.26 | 3.27 | 3.2 | 0.004 | 0.70 | 0.0 | 0.04 | 14.43 | 0.01 | 1.831 | 1.47 | 0.06 | 1.2 | 98.8 | 0.0 | -0.65 | 0.79 | 0.84 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31318 | 1918 | 15 | 30 | 9 | 0 | 15439 | logfile |
✘ | 7A6B | 11669 | 2023-11-20 | 2020-08-25 | 1.33 | 1.21 | — | 1.3 | 0.015 | 1.60 | 24.0 | 0.12 | 16.78 | 0.01 | 1.893 | 4.97 | 4.17 | 1.2 | 98.8 | 0.0 | 2.52 | 0.52 | 0.65 | 9.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41494 | 4152 | 72 | 0 | 32 | 3854 | 0 | logfile |
✘ | 8FCN | 28987 | 2023-11-21 | 2022-12-01 | 2.95 | 3.93 | 4.11 | 3.5 | 0.010 | 0.82 | 0.0 | 0.06 | 12.73 | 0.00 | 2.403 | 0.65 | 0.11 | 1.2 | 98.7 | 0.1 | 0.17 | 0.76 | 0.64 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35034 | 4446 | 18 | 0 | 12 | 0 | 0 | logfile |
✘ | 7SXY | 25510 | 2023-11-14 | 2021-11-24 | 2.79 | 3.53 | — | 3.2 | 0.005 | 0.84 | 0.0 | 0.06 | 13.35 | 0.01 | 2.303 | 2.81 | 0.00 | 1.3 | 98.7 | 0.0 | -0.48 | 0.82 | 0.87 | 3.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6557 | 797 | 4 | 0 | 7 | 0 | 0 | logfile |
✘ | 8oTT | 17184 | 2023-11-15 | 2023-04-21 | 3.3 | 3.86 | 3.31 | 3.4 | 0.005 | 0.77 | 0.0 | 0.05 | 24.44 | 0.01 | 2.513 | 1.15 | 0.16 | 1.3 | 98.7 | 0.0 | 1.04 | 0.89 | 0.82 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12973 | 859 | 17 | 288 | 8 | 0 | 0 | logfile |