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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7WS0 | 32739 | 2023-11-20 | 2022-01-28 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.91 | — | — | 2.70 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 14.94 | 0.00 | 2.145 | 7.12 | 0.12 | 3.7 | 96.3 | 0.0 | -0.39 | — | 0.78 | 0.85 | 2.61 | 30440 | 3817 | 30 | 0 | 66 | 0 | 0 | logfile |
✘ | 5ZSU | 6952 | 2023-11-21 | 2018-04-29 | 4.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.45 | — | — | — | 4.3 | 0.003 | 0.78 | 0.0 | 0.04 | 12.28 | 0.00 | 2.146 | 16.96 | 0.03 | 8.5 | 91.5 | 0.0 | -1.52 | — | 0.70 | 0.76 | — | 34959 | 4227 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-11-14 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.005 | 0.71 | 0.0 | 0.04 | 15.42 | 0.01 | 2.070 | 22.73 | 0.00 | 8.6 | 91.0 | 0.4 | -1.53 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 8oPN | 17077 | 2023-11-20 | 2023-04-07 | 4.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28543 | 3555 | 13 | 0 | 40 | 0 | 0 | logfile |
✘ | 6XKJ | 22219 | 2023-11-15 | 2020-06-26 | 3.54 | 3.39 | — | 3.4 | 0.009 | 0.83 | 0.0 | 0.05 | 14.92 | 0.00 | 2.246 | 12.86 | 0.00 | 2.4 | 97.6 | 0.0 | 0.54 | 0.62 | 0.85 | 1.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11056 | 1360 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 8AM5 | 15522 | 2023-11-21 | 2022-08-02 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32746 | 3194 | 29 | 0 | 146 | 0 | 0 | logfile |
✘ | 8ETU | 28599 | 2023-11-20 | 2022-10-17 | 2.8 | 2.33 | 2.89 | 2.1 | 0.005 | 0.92 | 2.0 | 0.05 | 17.82 | 0.01 | 1.580 | 5.60 | 0.06 | 3.5 | 96.5 | 0.0 | -1.69 | 0.73 | 0.79 | 2.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28670 | 3656 | 16 | 0 | 6 | 0 | 0 | logfile |
✘ | 8GMR | 40231 | 2023-11-15 | 2023-03-27 | 3.76 | 4.01 | 3.82 | 4.0 | 0.006 | 1.18 | 0.0 | 0.04 | 16.94 | 0.01 | 1.574 | 20.59 | 0.00 | 12.6 | 87.0 | 0.5 | -5.54 | 0.62 | 0.81 | 3.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12472 | 1712 | 16 | 0 | 8 | 0 | 0 | logfile |
✘ | 8P98 | 17575 | 2023-11-14 | 2023-06-05 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7830 | 956 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8EDG | 28034 | 2023-11-18 | 2022-09-04 | 4.64 | 4.06 | 4.63 | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 21.14 | 0.00 | 2.143 | 12.47 | 0.05 | 4.8 | 95.2 | 0.0 | -0.34 | 0.69 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23358 | 2348 | 18 | 216 | 6 | 0 | 0 | logfile |
✘ | 8GKG | 40183 | 2023-11-17 | 2023-03-18 | 4.38 | 3.94 | 4.39 | 4.9 | 0.002 | 0.54 | 0.0 | 0.04 | 12.43 | 0.00 | 2.293 | 5.72 | 0.00 | 16.3 | 83.5 | 0.2 | -2.00 | 0.45 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17160 | 2700 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 8J1B | 35918 | 2023-11-17 | 2023-04-12 | 3.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19427 | 2388 | 8 | 0 | 5 | 0 | 0 | logfile |
✘ | 8iWX | 35782 | 2023-11-14 | 2023-03-31 | 2.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8238 | 654 | 6 | 0 | 57 | 0 | 0 | logfile |
✘ | 8T6V | 41082 | 2023-11-14 | 2023-06-18 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8686 | 1032 | 8 | 0 | 16 | 64 | 0 | logfile |
✘ | 8BWR | 16295 | 2023-11-14 | 2022-12-07 | 4.0 | 4.17 | 3.97 | 4.1 | 0.010 | 0.93 | 0.0 | 0.05 | 13.54 | 0.01 | 2.203 | 7.58 | 0.96 | 3.7 | 96.3 | 0.0 | -1.63 | 0.65 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9570 | 1195 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 8SiD | 40506 | 2023-11-21 | 2023-04-14 | 2.71 | 3.08 | 2.68 | 2.9 | 0.019 | 0.98 | 0.0 | 0.12 | 15.09 | 0.01 | 2.167 | 5.63 | 0.00 | 4.5 | 95.5 | 0.0 | -2.81 | 0.77 | 0.82 | 3.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34733 | 2121 | 18 | 0 | 34 | 0 | 16960 | logfile |
✘ | 8JPF | 36478 | 2023-11-13 | 2023-06-11 | 3.02 | 3.21 | 3.41 | 3.3 | 0.006 | 1.76 | 0.0 | 0.27 | 15.61 | 0.00 | 2.214 | 5.45 | 0.46 | 2.7 | 97.3 | 0.0 | 2.25 | 0.48 | 0.75 | 2.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2269 | 304 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8P97 | 17574 | 2023-11-14 | 2023-06-05 | 2.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7837 | 958 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8EU3 | 28603 | 2023-11-16 | 2022-10-18 | 3.62 | 3.87 | 3.65 | 3.9 | 0.014 | 1.04 | 0.0 | 0.09 | 15.17 | 0.01 | 2.211 | 7.13 | 0.19 | 4.0 | 96.0 | 0.0 | -3.46 | 0.64 | 0.79 | 1.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14596 | 1770 | 8 | 0 | 7 | 0 | 0 | logfile |
✘ | 8Do4 | 27590 | 2023-11-17 | 2022-07-12 | 3.2 | 3.38 | 3.21 | 3.5 | 0.005 | 0.81 | 0.0 | 0.05 | 16.40 | 0.00 | 2.056 | 12.09 | 1.54 | 3.4 | 96.6 | 0.0 | -0.40 | 0.69 | 0.68 | 1.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20163 | 2625 | 6 | 0 | 0 | 0 | 0 | logfile |