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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8ADW | 15372 | 2023-11-14 | 2022-07-11 | 2.95 | 2.93 | 2.87 | 3.0 | 0.009 | 1.46 | 0.0 | 0.07 | 22.42 | 0.01 | 2.469 | 8.01 | 23.33 | 7.7 | 92.3 | 0.0 | -4.02 | 0.51 | 0.80 | 4.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6920 | 990 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BQV | 16188 | 2023-11-14 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✘ | 8BQW | 16189 | 2023-11-17 | 2023-01-18 | 2.3 | 2.12 | 2.14 | 2.2 | 0.008 | 1.14 | 0.0 | 0.07 | 8.96 | 0.00 | 0.052 | 12.77 | 0.00 | 9.6 | 90.4 | 0.0 | -3.78 | 0.46 | 0.75 | 7.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17385 | 2310 | 90 | 0 | 270 | 135 | 0 | logfile |
✘ | 8DMG | 27536 | 2023-11-16 | 2022-07-08 | 4.4 | 5.39 | 4.50 | 4.6 | 0.029 | 2.33 | 20.0 | 0.12 | 16.89 | 0.01 | 0.312 | 28.72 | 6.80 | 6.0 | 92.3 | 1.7 | -2.43 | 0.79 | 0.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16844 | 2068 | 4 | 0 | 18 | 0 | 202 | logfile |
✘ | 8CE7 | 16600 | 2023-11-15 | 2023-02-01 | 2.7 | 2.34 | 2.46 | 2.7 | 0.010 | 1.47 | 12.0 | 0.09 | 13.19 | 0.01 | 0.000 | 16.71 | 3.33 | 9.0 | 91.0 | 0.0 | -3.63 | 0.44 | 0.73 | 6.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10512 | 1512 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YX3 | 14353 | 2023-11-20 | 2022-02-15 | 4.0 | 3.15 | 3.42 | 3.3 | 0.004 | 0.66 | 0.0 | 0.05 | 15.05 | 0.00 | 1.650 | 14.33 | 0.61 | 4.8 | 95.2 | 0.0 | -0.90 | 0.44 | 0.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 91116 | 11682 | 36 | 0 | 18 | 0 | 0 | logfile |
✘ | 6TGY | 10501 | 2023-11-21 | 2019-11-18 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.42 | — | — | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 96960 | 12480 | 120 | 0 | 0 | 0 | 0 | logfile |
✘ | 7KZN | 23083 | 2023-11-20 | 2020-12-10 | 4.0 | 2.94 | — | 2.2 | 0.010 | 1.36 | 7.0 | 0.07 | 14.78 | 0.01 | 2.202 | 10.83 | 0.48 | 10.0 | 89.8 | 0.2 | -3.22 | 0.70 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31205 | 4099 | 19 | 0 | 289 | 0 | 0 | logfile |
✘ | 8ooY | 17033 | 2023-11-13 | 2023-04-06 | 4.0 | 3.79 | 3.92 | 3.7 | 0.004 | 0.68 | 0.0 | 0.04 | 19.97 | 0.00 | 2.016 | 12.57 | 0.79 | 5.1 | 94.9 | 0.0 | -0.97 | 0.81 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5828 | 604 | 5 | 51 | 1 | 0 | 0 | logfile |
✘ | 8AZU | 15772 | 2023-11-18 | 2022-09-06 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.07 | — | — | 4.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23856 | 3108 | 42 | 0 | 0 | 0 | 0 | logfile |
✘ | 8BD3 | 15973 | 2023-11-16 | 2022-10-18 | 2.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 117990 | 10804 | 166 | 0 | 722 | 224 | 0 | logfile |
✘ | 8A7T | 15225 | 2023-11-13 | 2022-06-21 | 3.0 | 2.93 | 3.07 | 3.2 | 0.003 | 0.46 | 0.0 | 0.04 | 8.48 | 0.00 | 2.302 | 5.04 | 0.00 | 2.8 | 97.2 | 0.0 | -4.48 | 0.39 | 0.85 | 4.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3702 | 444 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6E8G | 9005 | 2023-11-21 | 2018-07-29 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.52 | — | — | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97272 | 12276 | 72 | 0 | 0 | 0 | 0 | logfile |
✘ | 6TZ4 | 20588 | 2023-11-22 | 2019-08-10 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.10 | — | — | 0.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99216 | 12852 | 72 | 0 | 0 | 0 | 0 | logfile |
✘ | 6TZ5 | 20589 | 2023-11-21 | 2019-08-10 | 3.1 | 3.56 | 3.05 | 3.7 | 0.003 | 0.51 | 0.0 | 0.04 | 14.11 | 0.00 | 2.220 | 7.23 | 0.00 | 1.1 | 98.9 | 0.0 | 0.24 | 0.40 | 0.55 | -0.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93500 | 12104 | 68 | 0 | 0 | 0 | 0 | logfile |
✘ | 8C5i | 16437 | 2023-11-20 | 2023-01-09 | 3.15 | 3.22 | — | 3.2 | 0.004 | 0.56 | 0.0 | 0.04 | 16.20 | 0.00 | 1.942 | 3.57 | 0.12 | 5.1 | 94.7 | 0.2 | -0.98 | 0.64 | 0.85 | 4.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 89156 | 5706 | 18 | 0 | 0 | 0 | 43742 | logfile |
✘ | 7UJL | 26566 | 2023-11-20 | 2022-03-31 | 3.3 | 3.53 | 3.27 | 3.4 | 0.015 | 2.11 | 120.0 | 0.14 | 20.03 | 0.02 | 1.760 | 6.20 | 0.00 | 5.1 | 94.9 | 0.0 | -1.45 | 0.58 | 0.70 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 86820 | 9660 | 180 | 480 | 0 | 0 | 0 | logfile |
✘ | 5LJV | 4062 | 2023-11-16 | 2016-07-21 | 3.64 | 3.75 | — | 3.7 | 0.030 | 2.85 | 85.0 | 0.16 | 18.81 | 0.02 | 2.070 | 21.28 | 11.82 | 7.4 | 89.7 | 2.9 | -4.53 | 0.71 | 0.84 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15000 | 1950 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 7RoD | 24592 | 2023-11-20 | 2021-07-30 | 3.8 | 4.39 | — | 3.9 | 0.004 | 0.70 | 0.0 | 0.05 | 11.72 | 0.01 | 2.388 | 12.51 | 0.00 | 4.3 | 95.7 | 0.0 | 2.79 | 0.69 | 0.87 | 2.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139258 | 19082 | 203 | 0 | 0 | 0 | 0 | logfile |
✘ | 2XEA | 1730 | 2023-11-15 | 2010-05-12 | 4.6 | 4.10 | — | 4.2 | 0.012 | 2.12 | 0.0 | 0.12 | 20.46 | 0.02 | 1.226 | 2.63 | 3.68 | 8.6 | 90.1 | 1.3 | -3.51 | 0.39 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62671 | 7546 | 98 | 147 | 0 | 0 | 0 | logfile |