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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5T4D | 8354 | 2023-11-16 | 2016-08-29 | 3.0 | 3.12 | 2.96 | 3.1 | 0.010 | 0.81 | 0.0 | 0.05 | 8.91 | 0.00 | 2.120 | 12.34 | 0.26 | 4.4 | 95.6 | 0.0 | -2.69 | 0.75 | 0.79 | 4.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14876 | 1852 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6UXB | 20932 | 2023-11-15 | 2019-11-07 | 4.9 | 5.50 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.627 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.74 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XJi | 33228 | 2023-11-14 | 2022-04-18 | 3.9 | 3.60 | 3.70 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 13.86 | 0.00 | 2.165 | 9.02 | 0.00 | 4.3 | 95.7 | 0.0 | -0.25 | 0.61 | 0.78 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7851 | 1027 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7VFF | 31951 | 2023-11-15 | 2021-09-13 | 4.1 | 3.76 | 3.90 | 4.0 | 0.007 | 0.72 | 0.0 | 0.05 | 13.87 | 0.00 | 2.334 | 2.40 | 0.41 | 3.6 | 96.4 | 0.0 | -0.82 | 0.79 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12579 | 1581 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ND4 | 12275 | 2023-11-20 | 2021-01-30 | 3.6 | 3.31 | — | 3.2 | 0.004 | 0.62 | 3.0 | 0.05 | 11.02 | 0.00 | 2.233 | 3.79 | 0.28 | 4.1 | 95.6 | 0.2 | -0.12 | 0.74 | 0.79 | 2.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29848 | 3729 | 30 | 0 | 71 | 0 | 0 | logfile |
✘ | 7ZR8 | 14886 | 2023-11-13 | 2022-05-03 | 3.7 | 3.81 | 3.43 | 3.8 | 0.003 | 0.46 | 0.0 | 0.04 | 8.45 | 0.00 | 2.181 | 7.02 | 0.74 | 3.9 | 96.1 | 0.0 | -0.94 | 0.72 | 0.82 | 2.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3693 | 471 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 7ND7 | 12278 | 2023-11-21 | 2021-01-30 | 3.6 | 3.91 | — | 3.8 | 0.004 | 0.63 | 0.0 | 0.05 | 11.00 | 0.00 | 2.229 | 3.62 | 0.38 | 3.7 | 96.2 | 0.2 | -0.12 | 0.77 | 0.72 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29591 | 3699 | 30 | 0 | 64 | 0 | 0 | logfile |
✘ | 7M9C | 23723 | 2023-11-20 | 2021-03-30 | 4.2 | 4.61 | 3.85 | 4.2 | 0.003 | 0.64 | 4.0 | 0.04 | 14.80 | 0.00 | 1.350 | 9.42 | 0.10 | 2.6 | 97.3 | 0.1 | 0.09 | 0.78 | 0.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30517 | 3598 | 26 | 66 | 10 | 0 | 0 | logfile |
✘ | 5M5W | 3446 | 2023-11-21 | 2016-10-23 | 3.8 | 3.89 | — | 3.9 | 0.003 | 0.62 | 4.0 | 0.05 | 12.18 | 0.00 | 1.405 | 11.80 | 1.35 | 4.3 | 95.6 | 0.1 | -4.15 | 0.68 | 0.68 | 1.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34780 | 4271 | 21 | 43 | 7 | 0 | 0 | logfile |
✘ | 5XB1 | 6714 | 2023-11-20 | 2017-03-15 | 3.0 | 3.16 | 2.84 | 3.1 | 0.007 | 0.71 | 0.0 | 0.05 | 10.82 | 0.00 | 2.173 | 4.34 | 0.00 | 2.0 | 98.0 | 0.0 | -6.31 | 0.80 | 0.88 | 4.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30847 | 3720 | 48 | 0 | 0 | 55 | 0 | logfile |
✘ | 8iLR | 35543 | 2023-11-15 | 2023-03-04 | 3.05 | 3.24 | 3.08 | 3.3 | 0.003 | 0.45 | 1.0 | 0.04 | 15.95 | 0.00 | 1.967 | 27.72 | 0.35 | 4.5 | 95.5 | 0.1 | 0.10 | 0.73 | 0.82 | 2.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10374 | 1253 | 3 | 0 | 1 | 7 | 0 | logfile |
✘ | 5GAQ | 8015 | 2023-11-17 | 2016-01-05 | 3.1 | 3.36 | — | 3.2 | 0.006 | 1.02 | 0.0 | 0.08 | 11.97 | 0.00 | 2.289 | 1.94 | 0.80 | 7.3 | 92.7 | 0.0 | -3.69 | 0.56 | 0.50 | 3.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20574 | 2592 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 8iHR | 35453 | 2023-11-18 | 2023-02-23 | 2.5 | 2.65 | 2.53 | 2.7 | 0.004 | 0.67 | 0.0 | 0.05 | 15.87 | 0.00 | 2.138 | 4.14 | 0.70 | 2.8 | 97.2 | 0.0 | -0.52 | 0.74 | 0.89 | 4.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24224 | 3200 | 16 | 0 | 16 | 0 | 0 | logfile |
✘ | 7DBH | 30631 | 2023-11-15 | 2020-10-20 | 3.6 | 4.18 | — | 3.4 | 0.007 | 0.74 | 1.0 | 0.05 | 28.88 | 0.00 | 1.451 | 11.99 | 0.17 | 3.2 | 96.8 | 0.0 | 0.54 | 0.91 | 0.85 | 2.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10631 | 697 | 10 | 252 | 0 | 0 | 0 | logfile |
✘ | 6GDG | 4390 | 2023-11-14 | 2018-04-23 | 4.11 | 3.92 | — | 4.0 | 0.008 | 1.10 | 0.0 | 0.06 | 12.81 | 0.00 | 2.449 | 0.87 | 2.07 | 4.9 | 94.6 | 0.5 | -3.15 | 0.76 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7223 | 997 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 8EAo | 27792 | 2023-11-18 | 2022-08-29 | 3.2 | 4.04 | 3.15 | 20.0 | 0.003 | 0.60 | 0.0 | 0.05 | 14.09 | 0.00 | 2.197 | 10.56 | 0.10 | 3.6 | 96.4 | 0.0 | 1.03 | 0.18 | 0.04 | -0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71628 | 8964 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 7QEV | 13942 | 2023-11-13 | 2021-12-03 | 2.9 | 3.46 | — | 3.1 | 0.009 | 0.86 | 0.0 | 0.05 | 13.68 | 0.00 | 2.164 | 5.92 | 0.00 | 4.3 | 95.7 | 0.0 | -0.15 | 0.79 | 0.86 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3204 | 383 | 6 | 0 | 8 | 8 | 0 | logfile |
✘ | 7JPT | 22422 | 2023-11-15 | 2020-08-09 | 3.2 | 3.54 | 3.50 | 3.5 | 0.002 | 0.55 | 0.0 | 0.04 | 13.65 | 0.00 | 2.267 | 8.72 | 3.48 | 6.8 | 93.2 | 0.1 | -4.02 | 0.66 | 0.71 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10220 | 1327 | 3 | 0 | 5 | 0 | 0 | logfile |
✘ | 7X28 | 32961 | 2023-11-22 | 2022-02-25 | 2.49 | 2.72 | — | 1.8 | 0.013 | 1.52 | 5.0 | 0.11 | 13.24 | 0.00 | 1.606 | 7.72 | 7.98 | 2.7 | 97.0 | 0.2 | 2.21 | 0.57 | 0.40 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31583 | 4119 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VF9 | 31948 | 2023-11-18 | 2021-09-10 | 4.04 | 4.13 | — | 4.1 | 0.001 | 0.38 | 0.0 | 0.04 | 9.65 | 0.00 | 2.176 | 3.71 | 0.05 | 1.5 | 98.5 | 0.0 | -4.44 | 0.74 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24247 | 3425 | 7 | 0 | 3 | 0 | 0 | logfile |