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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6TZ5 | 20589 | 2023-11-21 | 2019-08-10 | 3.1 | 3.56 | 3.05 | 3.7 | 0.003 | 0.51 | 0.0 | 0.04 | 14.11 | 0.00 | 2.220 | 7.23 | 0.00 | 1.1 | 98.9 | 0.0 | 0.24 | 0.40 | 0.55 | -0.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93500 | 12104 | 68 | 0 | 0 | 0 | 0 | logfile |
✘ | 8EAo | 27792 | 2023-11-18 | 2022-08-29 | 3.2 | 4.04 | 3.15 | 20.0 | 0.003 | 0.60 | 0.0 | 0.05 | 14.09 | 0.00 | 2.197 | 10.56 | 0.10 | 3.6 | 96.4 | 0.0 | 1.03 | 0.18 | 0.04 | -0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71628 | 8964 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6UMM | 20820 | 2023-11-18 | 2019-10-09 | 3.7 | 6.74 | 4.15 | 4.0 | 0.006 | 0.79 | 0.0 | 0.04 | 13.23 | 0.00 | 2.203 | 11.97 | 0.17 | 4.8 | 95.2 | 0.0 | -2.07 | 0.55 | 0.56 | -0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23658 | 3184 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZNK | 14804 | 2023-11-20 | 2022-04-21 | 3.9 | 6.01 | — | 7.4 | 0.006 | 0.88 | 2.0 | 0.05 | 11.83 | 0.01 | 1.707 | 9.96 | 5.83 | 6.4 | 93.3 | 0.3 | -2.12 | 0.73 | 0.46 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 88261 | 11599 | 32 | 6 | 0 | 0 | 0 | logfile |
✘ | 6RBE | 4794 | 2023-11-18 | 2019-04-10 | 3.8 | 4.03 | 3.73 | 40.0 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.25 | 0.02 | 0.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 6TZ4 | 20588 | 2023-11-22 | 2019-08-10 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.10 | — | — | 0.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99216 | 12852 | 72 | 0 | 0 | 0 | 0 | logfile |
✘ | 6QoZ | 4610 | 2023-11-17 | 2019-02-13 | 3.4 | 3.65 | 3.13 | 3.5 | 0.011 | 1.46 | 4.0 | 0.09 | 15.40 | 0.01 | 1.243 | 4.20 | 5.13 | 6.0 | 93.1 | 0.9 | -3.28 | 0.40 | 0.62 | 0.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17987 | 2307 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 7CQ7 | 30438 | 2023-11-16 | 2020-08-08 | 3.55 | 3.95 | — | 4.0 | 0.008 | 1.07 | 0.0 | 0.06 | 10.33 | 0.01 | 1.915 | 5.84 | 0.07 | 9.3 | 90.7 | 0.0 | -4.47 | 0.39 | 0.42 | 0.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13810 | 1766 | 8 | 0 | 9 | 0 | 0 | logfile |
✘ | 8FXH | 29533 | 2023-11-20 | 2023-01-24 | 2.8 | 2.94 | 2.88 | 4.0 | 0.006 | 1.37 | 50.0 | 0.10 | 17.25 | 0.01 | 2.235 | 6.73 | 1.19 | 7.8 | 91.8 | 0.4 | -1.03 | 0.32 | 0.19 | 0.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30228 | 3786 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RBE | 4795 | 2023-11-18 | 2019-04-10 | 3.8 | 3.81 | 4.03 | 5.1 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.38 | 0.09 | 0.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✘ | 6SPD | 10282 | 2023-11-20 | 2019-09-01 | 3.28 | 3.35 | — | 3.3 | 0.010 | 1.16 | 0.0 | 0.06 | 18.38 | 0.01 | 0.400 | 15.51 | 1.26 | 12.2 | 87.1 | 0.7 | -5.12 | 0.66 | 0.50 | 0.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 90352 | 3458 | 32 | 2967 | 0 | 0 | 0 | logfile |
✘ | 6TM5 | 10518 | 2023-11-15 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.83 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |
✘ | 7UFM | 26477 | 2023-11-22 | 2022-03-22 | 3.9 | 2.97 | 4.04 | 1.8 | 0.009 | 1.77 | 14.0 | 0.08 | 22.53 | 0.01 | 1.075 | 9.26 | 24.41 | 11.0 | 89.0 | 0.0 | -4.66 | 0.68 | 0.65 | 0.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36392 | 4354 | 30 | 72 | 14 | 0 | 0 | logfile |
✘ | 7ZNL | 14808 | 2023-11-20 | 2022-04-21 | 3.45 | 3.67 | 3.55 | 3.4 | 0.005 | 0.78 | 0.0 | 0.04 | 11.78 | 0.01 | 2.171 | 7.60 | 6.04 | 6.6 | 93.1 | 0.3 | -2.22 | 0.37 | 0.21 | 0.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 84821 | 11173 | 28 | 0 | 0 | 0 | 0 | logfile |
✘ | 8GNB | 34159 | 2023-11-16 | 2022-08-23 | 3.9 | 5.27 | 4.76 | 5.1 | 0.004 | 0.94 | 0.0 | 0.05 | 12.92 | 0.01 | 2.231 | 14.24 | 0.00 | 5.1 | 94.9 | 0.0 | -0.65 | 0.53 | 0.62 | 0.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15770 | 2010 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 8GA8 | 29892 | 2023-11-18 | 2023-02-22 | 3.5 | 3.70 | 3.49 | 3.7 | 0.003 | 0.54 | 0.0 | 0.04 | 17.43 | 0.00 | 2.028 | 11.33 | 0.33 | 2.6 | 97.4 | 0.0 | 0.98 | 0.70 | 0.69 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22011 | 2675 | 12 | 0 | 2 | 0 | 0 | logfile |
✘ | 8DRA | 27675 | 2023-11-14 | 2022-07-20 | 3.98 | 4.17 | 3.98 | 4.0 | 0.003 | 0.77 | 0.0 | 0.05 | 15.74 | 0.01 | 2.257 | 11.58 | 0.35 | 5.4 | 94.6 | 0.0 | -3.01 | 0.63 | 0.69 | 0.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9899 | 1218 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7KML | 22926 | 2023-11-21 | 2020-11-03 | 3.8 | 4.97 | 3.83 | 3.8 | 0.018 | 1.87 | 0.0 | 0.10 | 10.57 | 0.01 | 2.415 | 0.65 | 0.39 | 1.9 | 98.1 | 0.0 | 0.45 | 0.89 | 0.76 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35136 | 4413 | 39 | 0 | 78 | 0 | 0 | logfile |
✘ | 8oR2 | 17115 | 2023-11-16 | 2023-04-12 | 3.2 | 2.36 | 3.12 | 3.0 | 0.007 | 0.76 | 13.0 | 0.06 | 14.65 | 0.00 | 1.805 | 7.23 | 1.24 | 3.3 | 96.7 | 0.0 | 1.99 | 0.72 | 0.66 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16558 | 2072 | 5 | 0 | 3 | 0 | 0 | logfile |
✘ | 7S0S | 24792 | 2023-11-22 | 2021-08-31 | 3.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.73 | — | — | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100057 | 3946 | 46 | 3236 | 407 | 0 | 0 | logfile |