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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6SPG | 10285 | 2023-11-21 | 2019-09-01 | 3.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.03 | — | — | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.63 | — | — | — | 2.05 | 141963 | 5779 | 58 | 4526 | 172 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-11-14 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.005 | 0.71 | 0.0 | 0.04 | 15.42 | 0.01 | 2.070 | 22.73 | 0.00 | 8.6 | 91.0 | 0.4 | -1.53 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 5ZSU | 6952 | 2023-11-21 | 2018-04-29 | 4.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.45 | — | — | — | 4.3 | 0.003 | 0.78 | 0.0 | 0.04 | 12.28 | 0.00 | 2.146 | 16.96 | 0.03 | 8.5 | 91.5 | 0.0 | -1.52 | — | 0.70 | 0.76 | — | 34959 | 4227 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7FiZ | 31607 | 2023-11-22 | 2021-08-01 | 3.28 | 3.80 | — | 3.6 | 0.008 | 1.14 | 3.0 | 0.06 | 10.85 | 0.01 | 2.212 | 6.62 | 0.31 | 6.9 | 92.9 | 0.2 | -4.01 | 0.66 | 0.60 | 1.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.68 | — | — | — | 1.38 | 36970 | 4674 | 12 | 0 | 27 | 0 | 0 | logfile |
✘ | 7WRA | 32720 | 2023-11-20 | 2022-01-26 | 2.98 | 3.19 | — | 3.3 | 0.006 | 0.99 | 0.0 | 0.05 | 10.56 | 0.01 | 2.231 | 6.76 | 0.60 | 6.0 | 94.0 | 0.0 | -3.96 | 0.69 | 0.78 | 2.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.55 | — | — | — | 1.63 | 30373 | 3720 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7WS0 | 32739 | 2023-11-20 | 2022-01-28 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.91 | — | — | 2.70 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 14.94 | 0.00 | 2.145 | 7.12 | 0.12 | 3.7 | 96.3 | 0.0 | -0.39 | — | 0.78 | 0.85 | 2.61 | 30440 | 3817 | 30 | 0 | 66 | 0 | 0 | logfile |
✘ | 8BKA | 16094 | 2023-11-22 | 2022-11-08 | 2.7 | 2.53 | 2.80 | 2.6 | 0.003 | 0.56 | 0.0 | 0.04 | 18.73 | 0.00 | 2.186 | 3.28 | 1.64 | 1.9 | 98.1 | 0.0 | 4.05 | 0.68 | 0.89 | 4.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | 5.45 | — | — | — | 4.98 | 36093 | 4128 | 54 | 0 | 6 | 2271 | 0 | logfile |
✘ | 8i5B | 35193 | 2023-11-15 | 2023-01-24 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13440 | 1563 | 8 | 0 | 30 | 0 | 0 | logfile |
✘ | 8BKB | 16095 | 2023-11-21 | 2022-11-08 | 2.2 | 1.97 | 2.09 | 2.0 | 0.003 | 0.61 | 0.0 | 0.04 | 17.88 | 0.00 | 2.225 | 1.59 | 1.40 | 1.4 | 98.6 | 0.0 | 4.82 | 0.71 | 0.86 | 6.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35139 | 4128 | 54 | 0 | 6 | 1317 | 0 | logfile |
✘ | 8oR2 | 17115 | 2023-11-16 | 2023-04-12 | 3.2 | 2.36 | 3.12 | 3.0 | 0.007 | 0.76 | 13.0 | 0.06 | 14.65 | 0.00 | 1.805 | 7.23 | 1.24 | 3.3 | 96.7 | 0.0 | 1.99 | 0.72 | 0.66 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16558 | 2072 | 5 | 0 | 3 | 0 | 0 | logfile |
✘ | 8A1W | 15091 | 2023-11-20 | 2022-06-02 | 2.56 | 2.20 | 2.53 | 2.4 | 0.004 | 0.56 | 0.0 | 0.04 | 15.09 | 0.00 | 2.014 | 2.96 | 0.32 | 1.1 | 98.9 | 0.0 | 1.65 | 0.60 | 0.72 | 3.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30172 | 1908 | 16 | 0 | 16 | 289 | 14776 | logfile |
✘ | 7NJ3 | 12371 | 2023-11-20 | 2021-02-15 | 4.48 | 4.72 | — | 4.6 | 0.004 | 0.70 | 1.0 | 0.05 | 13.64 | 0.00 | 1.907 | 8.92 | 0.38 | 4.2 | 95.8 | 0.0 | -0.73 | 0.57 | 0.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28778 | 1795 | 6 | 23 | 0 | 0 | 13868 | logfile |
✘ | 6TU7 | 10590 | 2023-11-18 | 2020-01-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7YVL | 34131 | 2023-11-13 | 2022-08-19 | 3.3 | 3.44 | 3.21 | 3.4 | 0.011 | 1.16 | 5.0 | 0.07 | 12.98 | 0.01 | 2.155 | 18.66 | 1.42 | 9.0 | 90.6 | 0.5 | -4.93 | 0.57 | 0.77 | 1.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3224 | 419 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8i5X | 35197 | 2023-11-15 | 2023-01-26 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13590 | 1565 | 8 | 0 | 35 | 0 | 0 | logfile |
✘ | 7ASD | 11892 | 2023-11-20 | 2020-10-27 | 3.5 | 3.68 | 3.48 | 3.5 | 0.003 | 0.68 | 0.0 | 0.06 | 8.97 | 0.00 | 2.153 | 5.28 | 2.16 | 2.2 | 97.8 | 0.0 | 0.30 | 0.81 | 0.83 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30296 | 3664 | 48 | 0 | 72 | 0 | 0 | logfile |
✘ | 7YSW | 34084 | 2023-11-15 | 2022-08-13 | 3.03 | 3.51 | 3.06 | 3.4 | 0.007 | 1.01 | 0.0 | 0.20 | 16.78 | 0.00 | 1.948 | 10.59 | 4.77 | 6.4 | 93.6 | 0.0 | -1.74 | 0.76 | 0.80 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12407 | 1517 | 7 | 0 | 12 | 0 | 0 | logfile |
✘ | 8FCL | 28982 | 2023-11-22 | 2022-12-01 | 3.51 | 3.89 | 3.72 | 3.9 | 0.011 | 0.87 | 0.0 | 0.06 | 12.28 | 0.00 | 2.300 | 0.67 | 0.10 | 1.8 | 98.2 | 0.0 | 0.35 | 0.67 | 0.63 | 1.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36904 | 4667 | 13 | 0 | 12 | 0 | 0 | logfile |
✘ | 8GTQ | 34263 | 2023-11-20 | 2022-09-08 | 3.1 | 3.59 | 3.36 | 3.5 | 0.009 | 1.05 | 5.0 | 0.08 | 14.02 | 0.01 | 1.900 | 14.36 | 3.06 | 7.3 | 90.8 | 1.9 | -3.05 | 0.70 | 0.69 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30519 | 3759 | 33 | 0 | 75 | 0 | 0 | logfile |
✘ | 8GA8 | 29892 | 2023-11-18 | 2023-02-22 | 3.5 | 3.70 | 3.49 | 3.7 | 0.003 | 0.54 | 0.0 | 0.04 | 17.43 | 0.00 | 2.028 | 11.33 | 0.33 | 2.6 | 97.4 | 0.0 | 0.98 | 0.70 | 0.69 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22011 | 2675 | 12 | 0 | 2 | 0 | 0 | logfile |