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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5ZSU | 6952 | 2023-11-21 | 2018-04-29 | 4.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.45 | — | — | — | 4.3 | 0.003 | 0.78 | 0.0 | 0.04 | 12.28 | 0.00 | 2.146 | 16.96 | 0.03 | 8.5 | 91.5 | 0.0 | -1.52 | — | 0.70 | 0.76 | — | 34959 | 4227 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-11-14 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.005 | 0.71 | 0.0 | 0.04 | 15.42 | 0.01 | 2.070 | 22.73 | 0.00 | 8.6 | 91.0 | 0.4 | -1.53 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 7WS0 | 32739 | 2023-11-20 | 2022-01-28 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.91 | — | — | 2.70 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 14.94 | 0.00 | 2.145 | 7.12 | 0.12 | 3.7 | 96.3 | 0.0 | -0.39 | — | 0.78 | 0.85 | 2.61 | 30440 | 3817 | 30 | 0 | 66 | 0 | 0 | logfile |
✘ | 8BF8 | 16016 | 2023-11-13 | 2022-10-24 | 2.8 | 3.14 | 2.80 | 3.1 | 0.003 | 0.47 | 0.0 | 0.03 | 13.85 | 0.00 | 2.203 | 8.73 | 0.93 | 2.7 | 97.3 | 0.0 | 0.92 | 0.64 | 0.76 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4686 | 302 | 2 | 111 | 0 | 0 | 0 | logfile |
✘ | 7F9o | 31498 | 2023-11-16 | 2021-07-04 | 4.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106329 | 11553 | 82 | 0 | 461 | 0 | 0 | logfile |
✘ | 7R8o | 24320 | 2023-11-20 | 2021-06-26 | 3.5 | 3.86 | — | 3.9 | 0.008 | 1.48 | 13.0 | 0.09 | 12.90 | 0.02 | 1.876 | 11.98 | 1.03 | 3.6 | 96.3 | 0.1 | -0.25 | 0.71 | 0.80 | 2.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29964 | 3804 | 20 | 0 | 48 | 0 | 0 | logfile |
✘ | 6JCW | 9799 | 2023-11-20 | 2019-01-30 | 3.04 | 3.78 | — | 3.4 | 0.007 | 0.88 | 0.0 | 0.05 | 15.38 | 0.01 | 2.168 | 1.88 | 0.35 | 6.1 | 93.9 | 0.0 | -6.55 | 0.88 | 0.88 | 4.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30888 | 3912 | 36 | 0 | 24 | 100 | 0 | logfile |
✘ | 7ZDG | 14645 | 2023-11-14 | 2022-03-29 | 2.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9007 | 1157 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 6JX7 | 9891 | 2023-11-21 | 2019-04-22 | 3.31 | 3.76 | 3.45 | 3.7 | 0.010 | 1.26 | 3.0 | 0.10 | 14.57 | 0.02 | 2.092 | 8.88 | 0.82 | 12.3 | 87.4 | 0.3 | -5.20 | 0.57 | 0.71 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32115 | 3735 | 60 | 0 | 219 | 0 | 0 | logfile |
✘ | 7K8X | 22734 | 2023-11-20 | 2020-09-27 | 3.9 | 4.42 | — | 4.1 | 0.003 | 0.62 | 0.0 | 0.06 | 13.15 | 0.00 | 1.857 | 13.43 | 2.49 | 3.3 | 96.4 | 0.3 | -2.04 | 0.76 | 0.69 | 1.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27399 | 3478 | 10 | 0 | 28 | 0 | 0 | logfile |
✘ | 8ENN | 28274 | 2023-11-16 | 2022-09-30 | 2.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16749 | 1974 | 12 | 0 | 9 | 858 | 0 | logfile |
✘ | 6XM3 | 22254 | 2023-11-19 | 2020-06-29 | 2.9 | 3.02 | 2.92 | 3.0 | 0.013 | 1.03 | 3.0 | 0.07 | 14.51 | 0.01 | 2.233 | 3.36 | 0.66 | 7.4 | 92.5 | 0.2 | -4.38 | 0.66 | 0.86 | 3.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25384 | 3143 | 23 | 0 | 60 | 0 | 0 | logfile |
✘ | 8DDQ | 27338 | 2023-11-20 | 2022-06-18 | 2.7 | 2.93 | 2.76 | 2.9 | 0.015 | 0.96 | 0.0 | 0.07 | 11.81 | 0.00 | 2.231 | 4.92 | 1.61 | 3.4 | 96.6 | 0.0 | 0.95 | 0.77 | 0.85 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31842 | 3848 | 12 | 0 | 78 | 0 | 0 | logfile |
✘ | 7PiJ | 13438 | 2023-11-14 | 2021-08-20 | 3.78 | 4.14 | — | 4.1 | 0.015 | 1.17 | 0.0 | 0.05 | 13.54 | 0.01 | 1.166 | 13.45 | 0.11 | 10.6 | 89.3 | 0.1 | -3.26 | 0.50 | 0.53 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8194 | 1068 | 8 | 0 | 0 | 16 | 0 | logfile |
✘ | 6Z43 | 11068 | 2023-11-19 | 2020-05-22 | 3.3 | 3.43 | — | 3.4 | 0.006 | 0.61 | 0.0 | 0.05 | 10.89 | 0.00 | 2.094 | 4.31 | 0.68 | 3.5 | 96.5 | 0.0 | -0.78 | 0.78 | 0.84 | 3.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26725 | 3351 | 29 | 0 | 66 | 0 | 0 | logfile |
✘ | 8AVV | 15684 | 2023-11-14 | 2022-08-27 | 3.4 | 3.53 | 3.39 | 3.5 | 0.008 | 1.38 | 0.0 | 0.08 | 18.27 | 0.01 | 2.580 | 1.80 | 5.03 | 4.7 | 95.1 | 0.2 | -3.08 | 0.76 | 0.87 | 2.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7794 | 1010 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 6Y5R | 10703 | 2023-11-15 | 2020-02-25 | 3.76 | 3.87 | 3.73 | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 11.47 | 0.00 | 2.147 | 7.90 | 0.07 | 4.4 | 95.6 | 0.0 | -2.26 | 0.68 | 0.85 | 2.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13592 | 1758 | 6 | 0 | 8 | 0 | 0 | logfile |
✘ | 8CYi | 27078 | 2023-11-16 | 2022-05-23 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14621 | 932 | 3 | 0 | 2 | 0 | 7191 | logfile |
✘ | 7YVS | 34137 | 2023-11-20 | 2022-08-19 | 2.8 | 3.06 | 2.90 | 3.0 | 0.004 | 0.60 | 0.0 | 0.05 | 13.86 | 0.00 | 2.173 | 6.15 | 0.98 | 4.9 | 95.1 | 0.0 | -0.49 | 0.77 | 0.88 | 3.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30593 | 3856 | 15 | 0 | 21 | 0 | 0 | logfile |
✘ | 8DG5 | 27416 | 2023-11-16 | 2022-06-23 | 3.26 | 3.59 | 3.37 | 3.5 | 0.011 | 1.42 | 1.0 | 0.06 | 14.99 | 0.01 | 2.013 | 8.22 | 0.00 | 8.0 | 91.7 | 0.3 | -2.73 | 0.69 | 0.69 | 1.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16269 | 1887 | 5 | 50 | 12 | 0 | 0 | logfile |