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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5ZSU | 6952 | 2023-11-21 | 2018-04-29 | 4.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.45 | — | — | — | 4.3 | 0.003 | 0.78 | 0.0 | 0.04 | 12.28 | 0.00 | 2.146 | 16.96 | 0.03 | 8.5 | 91.5 | 0.0 | -1.52 | — | 0.70 | 0.76 | — | 34959 | 4227 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WS0 | 32739 | 2023-11-20 | 2022-01-28 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.91 | — | — | 2.70 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 14.94 | 0.00 | 2.145 | 7.12 | 0.12 | 3.7 | 96.3 | 0.0 | -0.39 | — | 0.78 | 0.85 | 2.61 | 30440 | 3817 | 30 | 0 | 66 | 0 | 0 | logfile |
✘ | 6o7K | 0643 | 2023-11-14 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.005 | 0.71 | 0.0 | 0.04 | 15.42 | 0.01 | 2.070 | 22.73 | 0.00 | 8.6 | 91.0 | 0.4 | -1.53 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 7E0H | 30932 | 2023-11-14 | 2021-01-28 | 3.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8017 | 661 | 6 | 0 | 57 | 0 | 0 | logfile |
✘ | 3JC6 | 6534 | 2023-11-18 | 2015-11-24 | 3.7 | 4.01 | — | 3.9 | 0.009 | 1.54 | 0.0 | 0.06 | 12.91 | 0.01 | 1.203 | 39.73 | 0.87 | 9.8 | 89.0 | 1.1 | -3.87 | 0.79 | 0.76 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23732 | 2953 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 7DEG | 30657 | 2023-11-15 | 2020-11-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12852 | 1520 | 12 | 0 | 18 | 0 | 0 | logfile |
✘ | 7Lo6 | 23462 | 2023-11-17 | 2021-02-09 | 3.9 | 4.03 | — | 3.8 | 0.011 | 0.99 | 0.0 | 0.07 | 14.12 | 0.01 | 1.951 | 19.52 | 0.64 | 12.9 | 87.1 | 0.0 | -5.44 | 0.85 | 0.85 | 2.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18006 | 2198 | 27 | 0 | 62 | 0 | 0 | logfile |
✘ | 7XL4 | 33272 | 2023-11-18 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 8HJ9 | 34835 | 2023-11-13 | 2022-11-22 | 3.12 | 3.29 | 3.00 | 3.2 | 0.004 | 0.65 | 0.0 | 0.04 | 15.54 | 0.00 | 2.234 | 10.94 | 0.00 | 2.7 | 97.3 | 0.0 | 1.80 | 0.43 | 0.76 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3274 | 416 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 5NiK | 3652 | 2023-11-21 | 2017-03-24 | 3.3 | 3.47 | — | 3.4 | 0.010 | 1.29 | 0.0 | 0.04 | 10.30 | 0.01 | 0.941 | 22.00 | 0.24 | 6.4 | 91.6 | 1.9 | -1.88 | 0.64 | 0.59 | 1.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35215 | 4582 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 7BGD | 12178 | 2023-11-21 | 2021-01-06 | 3.2 | 3.27 | — | 3.2 | 0.008 | 1.30 | 0.0 | 0.06 | 16.20 | 0.01 | 2.327 | 3.64 | 2.16 | 8.0 | 91.7 | 0.3 | -5.26 | 0.85 | 0.83 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35364 | 1410 | 14 | 1128 | 0 | 0 | 0 | logfile |
✘ | 6LBH | 0869 | 2023-11-14 | 2019-11-14 | 3.7 | 3.79 | — | 3.8 | 0.006 | 0.82 | 0.0 | 0.05 | 13.62 | 0.00 | 2.079 | 18.56 | 0.20 | 7.7 | 92.2 | 0.2 | -2.87 | 0.75 | 0.83 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9219 | 1236 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VPD | 32063 | 2023-11-20 | 2021-10-15 | 3.77 | 4.04 | 3.88 | 3.9 | 0.005 | 0.79 | 0.0 | 0.05 | 20.10 | 0.01 | 1.979 | 6.99 | 0.44 | 3.6 | 96.4 | 0.0 | -0.05 | 0.82 | 0.73 | 1.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30924 | 3531 | 14 | 168 | 9 | 0 | 0 | logfile |
✘ | 6N2Y | 9333 | 2023-11-21 | 2018-11-14 | 3.0 | 3.23 | 2.99 | 3.2 | 0.009 | 1.19 | 14.0 | 0.07 | 10.48 | 0.01 | 0.765 | 8.98 | 0.40 | 3.4 | 96.5 | 0.1 | -2.50 | 0.62 | 0.74 | 4.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35043 | 4696 | 27 | 0 | 26 | 0 | 0 | logfile |
✘ | 6ZY9 | 11555 | 2023-11-16 | 2020-07-30 | 3.3 | 3.42 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 12.81 | 0.01 | 2.174 | 2.45 | 0.25 | 4.7 | 95.3 | 0.0 | -5.76 | 0.62 | 0.71 | 1.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14973 | 1985 | 14 | 0 | 4 | 0 | 0 | logfile |
✘ | 7XL3 | 33271 | 2023-11-19 | 2022-04-21 | 3.13 | 3.20 | — | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 12.03 | 0.00 | 2.263 | 4.77 | 1.08 | 2.9 | 97.1 | 0.0 | -4.73 | 0.73 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25700 | 3480 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 7F7F | 31487 | 2023-11-15 | 2021-06-29 | 3.81 | 3.37 | — | 3.8 | 0.008 | 1.12 | 0.0 | 0.06 | 11.80 | 0.01 | 2.121 | 6.53 | 0.31 | 9.6 | 90.3 | 0.1 | -5.60 | 0.64 | 0.70 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12076 | 1497 | 6 | 0 | 8 | 0 | 0 | logfile |
✘ | 7MGZ | 23831 | 2023-11-21 | 2021-04-14 | 2.8 | 2.90 | — | 2.9 | 0.014 | 2.03 | 8.0 | 0.11 | 15.21 | 0.02 | 1.574 | 3.95 | 1.66 | 3.4 | 96.5 | 0.2 | -1.41 | 0.59 | 0.76 | 4.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34852 | 2172 | 8 | 0 | 16 | 0 | 17316 | logfile |
✘ | 6Z16 | 11027 | 2023-11-20 | 2020-05-12 | 2.98 | 2.98 | — | 3.1 | 0.008 | 1.13 | 0.0 | 0.06 | 12.51 | 0.01 | 2.238 | 3.49 | 0.10 | 4.5 | 95.5 | 0.0 | -2.64 | 0.73 | 0.83 | 3.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30250 | 3744 | 24 | 0 | 30 | 0 | 0 | logfile |
✘ | 7V26 | 31637 | 2023-11-21 | 2021-08-07 | 3.85 | 3.78 | — | 3.8 | 0.003 | 0.53 | 0.0 | 0.04 | 10.87 | 0.00 | 2.234 | 7.30 | 0.16 | 5.3 | 94.7 | 0.0 | -3.84 | 0.87 | 0.77 | 1.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35157 | 4506 | 12 | 0 | 45 | 0 | 0 | logfile |