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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6o7K | 0643 | 2023-11-14 | 2019-03-08 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -2.76 | — | — | — | 4.1 | 0.005 | 0.71 | 0.0 | 0.04 | 15.42 | 0.01 | 2.070 | 22.73 | 0.00 | 8.6 | 91.0 | 0.4 | -1.53 | — | 0.90 | 0.84 | — | 57748 | 2934 | 25 | 1622 | 0 | 0 | 0 | logfile |
✘ | 5ZSU | 6952 | 2023-11-21 | 2018-04-29 | 4.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.45 | — | — | — | 4.3 | 0.003 | 0.78 | 0.0 | 0.04 | 12.28 | 0.00 | 2.146 | 16.96 | 0.03 | 8.5 | 91.5 | 0.0 | -1.52 | — | 0.70 | 0.76 | — | 34959 | 4227 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WS0 | 32739 | 2023-11-20 | 2022-01-28 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.91 | — | — | 2.70 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 14.94 | 0.00 | 2.145 | 7.12 | 0.12 | 3.7 | 96.3 | 0.0 | -0.39 | — | 0.78 | 0.85 | 2.61 | 30440 | 3817 | 30 | 0 | 66 | 0 | 0 | logfile |
✘ | 8i6S | 35205 | 2023-11-14 | 2023-01-29 | 4.4 | 4.82 | 4.39 | 4.4 | 0.006 | 1.39 | 2.0 | 0.06 | 15.97 | 0.01 | 2.073 | 4.55 | 0.97 | 4.1 | 95.7 | 0.2 | -5.18 | 0.73 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8641 | 1125 | 7 | 0 | 4 | 0 | 0 | logfile |
✘ | 8JB0 | 36139 | 2023-11-20 | 2023-05-07 | 4.2 | 4.12 | 4.27 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 16.01 | 0.00 | 2.196 | 13.62 | 0.09 | 2.8 | 97.0 | 0.2 | 2.31 | 0.76 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31387 | 3858 | 48 | 0 | 36 | 0 | 0 | logfile |
✘ | 8oR2 | 17115 | 2023-11-16 | 2023-04-12 | 3.2 | 2.36 | 3.12 | 3.0 | 0.007 | 0.76 | 13.0 | 0.06 | 14.65 | 0.00 | 1.805 | 7.23 | 1.24 | 3.3 | 96.7 | 0.0 | 1.99 | 0.72 | 0.66 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16558 | 2072 | 5 | 0 | 3 | 0 | 0 | logfile |
✘ | 8DUL | 27722 | 2023-11-16 | 2022-07-27 | 4.17 | 4.34 | 4.24 | 4.7 | 0.005 | 1.04 | 0.0 | 0.07 | 13.22 | 0.02 | 2.317 | 6.11 | 0.06 | 5.3 | 94.7 | 0.0 | -2.03 | 0.56 | 0.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14203 | 1802 | 15 | 0 | 10 | 0 | 0 | logfile |
✘ | 7YSW | 34084 | 2023-11-15 | 2022-08-13 | 3.03 | 3.51 | 3.06 | 3.4 | 0.007 | 1.01 | 0.0 | 0.20 | 16.78 | 0.00 | 1.948 | 10.59 | 4.77 | 6.4 | 93.6 | 0.0 | -1.74 | 0.76 | 0.80 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12407 | 1517 | 7 | 0 | 12 | 0 | 0 | logfile |
✘ | 8BKB | 16095 | 2023-11-21 | 2022-11-08 | 2.2 | 1.97 | 2.09 | 2.0 | 0.003 | 0.61 | 0.0 | 0.04 | 17.88 | 0.00 | 2.225 | 1.59 | 1.40 | 1.4 | 98.6 | 0.0 | 4.82 | 0.71 | 0.86 | 6.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35139 | 4128 | 54 | 0 | 6 | 1317 | 0 | logfile |
✘ | 8i5B | 35193 | 2023-11-15 | 2023-01-24 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13440 | 1563 | 8 | 0 | 30 | 0 | 0 | logfile |
✘ | 8SA4 | 40264 | 2023-11-13 | 2023-03-31 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5193 | 0 | 3 | 236 | 1 | 0 | 0 | logfile |
✘ | 8GA8 | 29892 | 2023-11-18 | 2023-02-22 | 3.5 | 3.70 | 3.49 | 3.7 | 0.003 | 0.54 | 0.0 | 0.04 | 17.43 | 0.00 | 2.028 | 11.33 | 0.33 | 2.6 | 97.4 | 0.0 | 0.98 | 0.70 | 0.69 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22011 | 2675 | 12 | 0 | 2 | 0 | 0 | logfile |
✘ | 7ASD | 11892 | 2023-11-20 | 2020-10-27 | 3.5 | 3.68 | 3.48 | 3.5 | 0.003 | 0.68 | 0.0 | 0.06 | 8.97 | 0.00 | 2.153 | 5.28 | 2.16 | 2.2 | 97.8 | 0.0 | 0.30 | 0.81 | 0.83 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30296 | 3664 | 48 | 0 | 72 | 0 | 0 | logfile |
✘ | 8i5X | 35197 | 2023-11-15 | 2023-01-26 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13590 | 1565 | 8 | 0 | 35 | 0 | 0 | logfile |
✘ | 7NJ3 | 12371 | 2023-11-20 | 2021-02-15 | 4.48 | 4.72 | — | 4.6 | 0.004 | 0.70 | 1.0 | 0.05 | 13.64 | 0.00 | 1.907 | 8.92 | 0.38 | 4.2 | 95.8 | 0.0 | -0.73 | 0.57 | 0.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28778 | 1795 | 6 | 23 | 0 | 0 | 13868 | logfile |
✘ | 8A1W | 15091 | 2023-11-20 | 2022-06-02 | 2.56 | 2.20 | 2.53 | 2.4 | 0.004 | 0.56 | 0.0 | 0.04 | 15.09 | 0.00 | 2.014 | 2.96 | 0.32 | 1.1 | 98.9 | 0.0 | 1.65 | 0.60 | 0.72 | 3.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30172 | 1908 | 16 | 0 | 16 | 289 | 14776 | logfile |
✘ | 6TU7 | 10590 | 2023-11-18 | 2020-01-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7YVL | 34131 | 2023-11-13 | 2022-08-19 | 3.3 | 3.44 | 3.21 | 3.4 | 0.011 | 1.16 | 5.0 | 0.07 | 12.98 | 0.01 | 2.155 | 18.66 | 1.42 | 9.0 | 90.6 | 0.5 | -4.93 | 0.57 | 0.77 | 1.24 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3224 | 419 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8P39 | 17385 | 2023-11-14 | 2023-05-17 | 2.58 | 2.12 | 2.56 | 1.5 | 0.007 | 0.63 | 0.0 | 0.04 | 12.12 | 0.00 | 1.951 | 9.53 | 5.43 | 5.6 | 94.1 | 0.3 | -1.34 | 0.71 | 0.64 | 3.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9705 | 1200 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 8oiP | 16895 | 2023-11-18 | 2023-03-23 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72369 | 6162 | 47 | 1041 | 144 | 3 | 0 | logfile |