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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6NEF | 9357 | 2023-11-20 | 2018-12-17 | 3.4 | 3.55 | — | 3.5 | 0.021 | 1.83 | 0.0 | 0.07 | 16.56 | 0.01 | 1.696 | 41.21 | 0.04 | 24.1 | 72.2 | 3.7 | -6.35 | 0.42 | 0.36 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29457 | 3663 | 9 | 0 | 63 | 0 | 0 | logfile |
✘ | 6JSi | 9882 | 2023-11-15 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✘ | 3J9Q | 6270 | 2023-11-22 | 2015-02-17 | 3.5 | 3.51 | — | 3.5 | 0.008 | 1.16 | 0.0 | 0.06 | 14.05 | 0.00 | 2.284 | 4.67 | 8.68 | 19.1 | 75.1 | 5.8 | -5.24 | 0.60 | 0.82 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99648 | 13224 | 48 | 0 | 0 | 0 | 0 | logfile |
✘ | 8GRN | 34209 | 2023-11-15 | 2022-09-02 | 2.5 | 3.22 | 2.91 | 3.2 | 0.033 | 3.22 | 177.0 | 0.26 | 23.86 | 0.02 | 1.568 | 20.38 | 36.57 | 14.8 | 77.8 | 7.4 | -5.62 | 0.54 | 0.70 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11602 | 1432 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 6WHR | 21673 | 2023-11-18 | 2020-04-08 | 3.99 | 4.51 | — | 4.3 | 0.015 | 1.23 | 0.0 | 0.07 | 14.89 | 0.01 | 1.968 | 30.82 | 2.94 | 21.2 | 78.0 | 0.8 | -5.90 | 0.69 | 0.73 | 1.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23370 | 3166 | 10 | 0 | 14 | 0 | 0 | logfile |
✘ | 6H3i | 0133 | 2023-11-17 | 2018-07-18 | 3.5 | 3.59 | — | 3.5 | 0.009 | 0.92 | 0.0 | 0.05 | 10.08 | 0.01 | 2.012 | 39.59 | 0.40 | 21.4 | 78.4 | 0.2 | -5.64 | 0.78 | 0.86 | 4.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20599 | 2597 | 3 | 0 | 0 | 0 | 53 | logfile |
✘ | 6SW9 | 10320 | 2023-11-17 | 2019-09-20 | 4.2 | 5.88 | 4.46 | 3.0 | 0.016 | 1.26 | 0.0 | 0.06 | 18.23 | 0.04 | 1.769 | 31.76 | 0.80 | 19.0 | 80.8 | 0.2 | -5.60 | 0.85 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 70661 | 4508 | 47 | 1593 | 41 | 42 | 0 | logfile |
✘ | 5ADY | 3133 | 2023-11-21 | 2015-08-25 | 4.5 | 4.75 | — | 4.5 | 0.011 | 1.28 | 0.0 | 0.06 | 18.75 | 0.01 | 1.391 | 57.89 | 0.21 | 11.7 | 81.7 | 6.7 | -3.35 | 0.72 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97364 | 4197 | 35 | 3020 | 2 | 0 | 0 | logfile |
✘ | 5GJR | 9512 | 2023-11-22 | 2016-07-01 | 3.5 | 3.65 | — | 3.5 | 0.013 | 1.53 | 38.0 | 0.08 | 16.77 | 0.01 | 1.114 | 63.72 | 11.56 | 13.2 | 81.8 | 5.0 | -4.66 | 0.71 | 0.77 | 1.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 142753 | 19945 | 76 | 0 | 12 | 0 | 0 | logfile |
✘ | 6WHT | 21675 | 2023-11-17 | 2020-04-08 | 4.39 | 5.00 | — | 4.6 | 0.006 | 0.85 | 0.0 | 0.05 | 12.85 | 0.01 | 1.983 | 23.64 | 0.63 | 17.3 | 82.3 | 0.3 | -5.16 | 0.65 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20532 | 3082 | 10 | 0 | 8 | 0 | 0 | logfile |
✘ | 6oUA | 20200 | 2023-11-13 | 2019-05-04 | 4.18 | 4.32 | — | 4.3 | 0.008 | 1.37 | 1.0 | 0.07 | 13.97 | 0.01 | 2.294 | 7.03 | 2.35 | 17.4 | 82.3 | 0.3 | -5.89 | 0.72 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5208 | 637 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RAV | 24387 | 2023-11-13 | 2021-07-02 | 3.3 | 2.69 | 3.21 | 2.4 | 0.004 | 0.93 | 0.0 | 0.05 | 15.84 | 0.01 | 2.224 | 16.68 | 1.17 | 16.7 | 82.9 | 0.4 | -3.36 | 0.72 | 0.71 | 2.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6215 | 773 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 6Q6i | 4468 | 2023-11-14 | 2018-12-11 | 3.7 | 3.77 | — | 3.8 | 0.009 | 1.22 | 0.0 | 0.06 | 17.03 | 0.01 | 2.244 | 8.63 | 1.89 | 16.7 | 83.0 | 0.3 | -5.81 | 0.70 | 0.74 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57200 | 7490 | 10 | 0 | 10 | 0 | 0 | logfile |
✘ | 6XKT | 22224 | 2023-11-15 | 2020-06-27 | 3.75 | 3.88 | — | 3.8 | 0.009 | 0.99 | 1.0 | 0.07 | 13.78 | 0.01 | 1.732 | 26.25 | 0.08 | 16.5 | 83.1 | 0.4 | -4.20 | 0.75 | 0.79 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13079 | 1678 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 6XP5 | 22284 | 2023-11-18 | 2020-07-08 | 4.2 | 4.73 | — | 4.3 | 0.004 | 0.90 | 0.0 | 0.05 | 14.32 | 0.00 | 2.131 | 14.90 | 0.27 | 15.9 | 83.2 | 0.9 | -5.23 | 0.79 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21065 | 2707 | 15 | 0 | 221 | 0 | 0 | logfile |
✘ | 8GKG | 40183 | 2023-11-17 | 2023-03-18 | 4.38 | 3.94 | 4.39 | 4.9 | 0.002 | 0.54 | 0.0 | 0.04 | 12.43 | 0.00 | 2.293 | 5.72 | 0.00 | 16.3 | 83.5 | 0.2 | -2.00 | 0.45 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17160 | 2700 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7D44 | 30569 | 2023-11-19 | 2020-09-22 | 4.0 | 4.14 | — | 4.0 | 0.006 | 0.86 | 0.0 | 0.05 | 14.78 | 0.00 | 2.049 | 20.50 | 0.28 | 16.3 | 83.6 | 0.1 | -5.25 | 0.80 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28391 | 3825 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7D7D | 30605 | 2023-11-21 | 2020-10-03 | 4.5 | 4.30 | — | 4.2 | 0.008 | 0.93 | 0.0 | 0.05 | 17.50 | 0.01 | 1.978 | 34.35 | 0.67 | 15.6 | 84.3 | 0.1 | -5.01 | 0.79 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33755 | 4076 | 13 | 94 | 3 | 0 | 0 | logfile |
✘ | 7CZS | 30515 | 2023-11-21 | 2020-09-09 | 3.6 | 3.71 | — | 3.6 | 0.013 | 1.30 | 8.0 | 0.09 | 17.82 | 0.01 | 1.914 | 35.67 | 12.67 | 11.5 | 84.4 | 4.1 | -4.03 | 0.57 | 0.66 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34321 | 4310 | 32 | 0 | 71 | 0 | 0 | logfile |
✘ | 5GJQ | 9511 | 2023-11-22 | 2016-07-01 | 4.35 | 4.02 | — | 3.8 | 0.016 | 1.83 | 29.0 | 0.09 | 16.70 | 0.01 | 1.073 | 47.82 | 10.02 | 11.3 | 84.5 | 4.2 | -4.17 | 0.79 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98461 | 13520 | 54 | 0 | 6 | 0 | 0 | logfile |