Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EW2	28640	2024-09-25	2022-10-21	3.1	3.17	3.24	3.1	0.004	0.63	0.0	0.04	17.05	0.00	2.188	13.54	0.46	3.4	96.6	0.0	0.64	0.78	0.88	2.37	3.1	0.004	0.59	0.0	0.04	17.53	0.00	2.562	9.79	4.01	3.3	96.7	0.0	0.88	0.34	0.78	0.88	2.21	10340	1356	4	0	0	0	0	logfile
✔	6WCZ	21618	2024-09-25	2020-03-31	4.0	4.24	—	4.0	0.009	1.22	0.0	0.06	12.53	0.01	2.085	14.60	2.55	12.9	87.1	0.0	-4.79	0.82	0.77	—	4.0	0.003	0.75	0.0	0.04	15.09	0.00	2.211	11.76	3.02	6.0	94.0	0.0	-1.49	1.73	0.83	0.77	—	9894	1231	3	0	2	0	0	logfile
✔	7WUi	32836	2024-09-26	2022-02-08	3.1	2.72	—	3.1	0.007	1.11	0.0	0.07	13.96	0.01	2.221	25.88	0.29	4.3	95.7	0.0	-2.70	0.53	0.65	2.45	3.0	0.005	0.71	0.0	0.05	15.97	0.00	2.456	20.42	2.30	3.9	96.1	0.0	-1.07	0.55	0.57	0.74	2.37	9666	1225	7	0	0	0	0	logfile
✔	6LQJ	0947	2024-09-27	2020-01-13	3.24	3.40	3.06	3.4	0.007	0.74	0.0	0.05	16.29	0.00	2.216	11.27	5.34	9.1	90.9	0.0	-3.28	0.74	0.84	2.87	3.4	0.004	0.65	0.0	0.05	17.00	0.00	2.531	9.59	4.26	9.1	90.9	0.0	-0.55	0.43	0.71	0.84	2.92	17100	2214	18	0	0	0	0	logfile
✔	6E1M	8957	2024-09-25	2018-07-10	3.3	3.50	3.31	3.6	0.018	1.61	0.0	0.08	14.98	0.01	1.976	8.65	0.11	8.4	91.5	0.1	-5.95	0.50	0.74	3.94	3.6	0.004	0.79	0.0	0.04	15.83	0.00	2.303	10.95	2.34	5.6	94.4	0.0	-0.42	0.71	0.55	0.77	2.24	8913	1072	6	0	23	2	0	logfile
✔	6XLE	22241	2024-09-26	2020-06-28	2.74	2.85	—	2.8	0.003	0.49	0.0	0.04	10.22	0.00	2.095	5.07	0.07	1.4	98.6	0.0	-3.54	0.75	0.80	3.20	2.8	0.002	0.57	0.0	0.04	16.51	0.00	2.028	5.56	1.11	2.6	97.4	0.0	-0.15	0.80	0.78	0.86	3.17	12240	1502	6	0	6	0	0	logfile
✔	6oiS	20080	2024-09-25	2019-04-09	3.6	3.71	—	3.6	0.009	1.05	0.0	0.06	10.80	0.01	2.315	5.76	0.68	4.2	95.8	0.0	-2.46	0.78	0.81	3.12	3.6	0.003	0.63	0.0	0.04	15.11	0.00	2.392	6.04	2.62	2.6	97.4	0.0	1.58	2.26	0.79	0.83	2.45	10732	1365	6	0	0	0	0	logfile
✔	7AHH	11786	2024-09-26	2020-09-24	3.5	3.59	3.55	3.6	0.008	0.97	0.0	0.07	14.62	0.00	2.213	14.34	0.23	7.6	92.4	0.0	-1.56	0.70	0.79	2.43	3.6	0.003	0.65	0.0	0.04	15.86	0.00	2.525	7.74	1.74	3.3	96.7	0.0	0.66	1.19	0.71	0.81	1.95	12125	1562	7	0	4	0	0	logfile
✔	7LYB	23591	2024-09-28	2021-03-06	3.28	3.92	3.31	3.6	0.006	0.73	0.0	0.04	26.07	0.00	1.330	8.91	0.00	4.7	95.3	0.0	-1.02	0.88	0.86	1.97	3.6	0.004	0.68	0.0	0.04	26.05	0.00	2.077	8.58	2.13	3.4	96.6	0.0	1.78	1.19	0.87	0.88	1.06	14699	1096	15	293	4	0	0	logfile
✔	7FFN	31569	2024-09-24	2021-07-23	3.0	3.15	—	3.1	0.007	0.95	0.0	0.06	9.73	0.01	1.924	5.72	0.53	6.6	93.3	0.1	-3.00	0.39	0.80	3.34	3.1	0.004	0.69	0.0	0.05	14.49	0.01	2.282	6.72	1.91	5.8	94.2	0.0	-0.44	2.01	0.41	0.87	3.25	8589	1112	6	0	1	0	0	logfile
✔	6oMM	20126	2024-09-25	2019-04-19	3.17	3.31	—	3.3	0.005	0.93	0.0	0.06	9.85	0.01	2.222	4.84	0.00	3.1	96.9	0.0	-2.94	0.67	0.83	3.35	3.3	0.003	0.66	0.0	0.04	14.13	0.00	2.376	11.54	2.77	2.9	97.1	0.0	0.00	1.30	0.66	0.84	2.66	9134	1142	7	0	8	0	0	logfile
✔	6V5B	21051	2024-09-26	2019-12-04	3.7	4.57	—	4.4	0.007	1.10	1.0	0.06	18.49	0.01	1.972	10.05	0.50	11.7	88.2	0.2	-4.89	0.78	0.78	1.78	4.4	0.003	0.76	0.0	0.04	19.08	0.00	2.040	12.03	2.50	9.3	90.6	0.1	-1.68	1.33	0.79	0.79	1.36	12563	1341	5	78	3	0	0	logfile
✔	6NUS	0521	2024-09-24	2019-02-01	3.5	3.62	3.47	3.6	0.016	1.57	0.0	0.09	9.78	0.01	2.301	0.99	0.14	1.2	98.8	0.0	0.30	0.56	0.68	2.07	3.6	0.003	0.65	0.0	0.04	15.02	0.00	2.570	10.15	3.02	2.0	98.0	0.0	0.58	1.48	0.53	0.71	1.43	6632	827	3	0	2	0	0	logfile
✔	6BBM	7076	2024-09-30	2017-10-18	4.1	4.24	—	4.1	0.008	1.20	0.0	0.06	16.70	0.01	2.231	9.86	0.58	13.8	86.1	0.2	-5.97	0.74	0.74	—	4.1	0.004	0.82	0.0	0.05	15.31	0.00	2.448	13.34	0.00	12.9	87.1	0.0	-3.24	0.78	0.75	0.74	—	23956	2662	15	0	623	0	0	logfile
✔	7oGR	12886	2024-09-26	2021-05-07	3.0	3.10	2.89	3.1	0.003	0.69	0.0	0.05	13.65	0.01	2.309	3.41	0.00	5.2	94.8	0.0	-4.69	0.68	0.80	2.46	3.1	0.003	0.61	0.0	0.04	16.25	0.00	2.481	5.93	1.77	4.8	95.2	0.0	-0.88	1.02	0.69	0.84	2.48	14135	1775	7	0	1	0	0	logfile
✔	5oNV	3835	2024-09-27	2017-08-04	4.1	4.21	3.90	4.1	0.013	1.56	0.0	0.07	11.90	0.02	1.996	2.82	0.00	6.3	90.2	3.6	-2.61	0.68	0.83	—	4.1	0.005	0.82	0.0	0.05	13.82	0.00	1.892	11.80	0.00	5.6	94.2	0.2	0.01	1.54	0.68	0.85	—	14640	1855	10	0	10	0	0	logfile
✔	7DSQ	30841	2024-09-24	2020-12-31	3.4	3.49	—	3.5	0.010	1.19	0.0	0.49	22.62	0.01	2.292	5.94	0.89	8.8	90.3	0.9	-4.52	0.64	0.82	1.74	3.5	0.003	1.23	0.0	0.11	21.38	0.00	2.446	5.81	2.41	8.0	92.0	0.0	0.06	1.22	0.64	0.82	1.48	7507	935	8	0	11	15	0	logfile
✔	6WB2	21585	2024-09-24	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	16.51	0.00	2.293	7.78	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.003	0.58	0.0	0.04	16.75	0.00	2.143	8.44	0.17	3.4	96.6	0.0	-0.37	0.64	0.87	0.83	—	8407	946	4	75	0	0	0	logfile
✔	6PQR	20452	2024-09-25	2019-07-09	3.4	3.86	—	3.8	0.009	0.84	0.0	0.05	22.10	0.00	2.081	16.18	0.24	3.3	96.7	0.0	-3.38	0.74	0.80	2.06	3.8	0.003	0.60	0.0	0.04	22.02	0.00	2.031	12.19	1.09	4.1	95.9	0.0	-0.66	0.52	0.70	0.78	1.50	9266	936	8	88	6	0	0	logfile
✔	7RZH	24760	2024-09-27	2021-08-27	3.8	3.54	—	3.2	0.012	1.50	6.0	0.11	14.19	0.00	1.444	15.94	5.29	2.6	97.3	0.2	2.98	0.66	0.54	0.28	3.2	0.004	0.79	0.0	0.04	16.56	0.00	2.394	17.55	3.48	3.8	96.1	0.1	-0.28	3.17	0.72	0.64	0.46	15300	1867	2	0	0	0	0	logfile

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