Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6DDF	7869	2024-09-24	2018-05-10	3.5	4.16	3.83	4.1	0.006	1.01	0.0	0.06	10.48	0.01	2.228	7.85	0.72	8.3	91.5	0.1	-4.62	0.72	0.72	2.22	4.1	0.003	0.74	0.0	0.04	15.76	0.00	2.458	12.63	4.15	5.3	94.7	0.0	-1.46	1.34	0.70	0.75	1.21	6808	890	7	0	2	0	0	logfile
✔	8B1T	15804	2024-09-30	2022-09-12	3.4	3.56	3.57	3.4	0.003	0.54	0.0	0.04	13.04	0.00	2.065	6.12	1.44	1.1	98.9	0.0	-0.96	0.81	0.83	2.60	3.4	0.004	0.69	1.0	0.04	16.17	0.00	2.034	6.63	1.93	1.5	98.5	0.0	1.47	1.27	0.82	0.85	2.09	23986	2869	6	51	2	0	0	logfile
✔	7WYX	32897	2024-09-29	2022-02-16	3.4	3.47	—	3.5	0.011	1.35	0.0	0.07	20.16	0.01	1.893	10.48	10.43	8.3	91.0	0.7	-3.31	0.74	0.80	1.70	3.5	0.004	0.66	0.0	0.04	16.62	0.00	1.905	4.36	2.25	2.6	97.4	0.0	0.63	2.03	0.77	0.85	1.96	22714	2654	22	0	78	6	0	logfile
✔	7WoG	32651	2024-09-23	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.72	0.0	0.05	11.04	0.00	2.444	17.39	0.00	14.1	85.9	0.0	-2.82	0.98	0.54	0.54	—	3362	433	3	0	0	0	0	logfile
✔	7CR3	30446	2024-09-27	2020-08-12	3.6	3.76	—	3.7	0.002	0.55	0.0	0.04	14.56	0.00	2.232	12.46	0.00	3.3	96.7	0.0	-3.24	0.61	0.75	1.93	3.7	0.004	0.86	0.0	0.04	16.93	0.00	2.489	16.08	2.80	3.3	96.7	0.0	0.53	3.18	0.60	0.71	1.55	15924	1968	8	0	0	0	0	logfile
✔	6RWB	10037	2024-09-29	2019-06-04	3.25	3.23	—	3.2	0.006	0.99	0.0	0.05	10.24	0.01	2.253	4.65	0.36	9.9	90.1	0.0	-4.08	0.81	0.80	2.59	3.1	0.003	0.63	0.0	0.04	15.42	0.00	2.429	7.28	1.92	8.3	91.7	0.0	0.12	1.29	0.83	0.84	1.96	75405	9365	5	0	0	0	0	logfile
✔	7YQD	34024	2024-09-25	2022-08-06	3.4	3.67	3.38	3.7	0.012	1.46	7.0	0.10	13.55	0.00	2.335	4.80	7.63	0.5	99.5	0.0	6.20	0.79	0.85	0.96	3.7	0.003	0.60	0.0	0.04	16.64	0.00	2.390	6.45	3.02	0.7	99.3	0.0	4.46	0.66	0.77	0.84	1.18	10290	1330	7	0	0	0	0	logfile
✔	7P1J	13162	2024-09-24	2021-07-01	3.04	4.02	2.96	4.0	0.002	0.48	0.0	0.03	8.89	0.00	2.305	5.96	2.29	3.5	96.5	0.0	2.14	0.65	0.71	0.64	4.0	0.003	0.84	0.0	0.04	14.60	0.00	2.432	12.51	3.44	5.7	94.3	0.0	1.13	1.40	0.66	0.72	0.72	6502	868	2	0	0	0	0	logfile
✔	7TQV	26073	2024-09-28	2022-01-27	3.43	3.72	—	3.7	0.002	0.38	0.0	0.04	10.87	0.00	2.162	5.00	0.82	3.8	96.2	0.0	-0.34	0.68	0.69	2.18	3.6	0.003	0.57	0.0	0.04	14.67	0.00	2.131	6.95	2.29	3.4	96.6	0.0	-0.73	1.50	0.73	0.77	2.10	17792	2083	8	66	0	0	0	logfile
✔	6VXo	21446	2024-09-24	2020-02-22	3.5	3.81	—	3.8	0.012	1.40	0.0	0.05	24.97	0.00	2.125	14.64	21.57	12.2	87.4	0.4	-3.90	0.63	0.83	0.88	3.8	0.003	0.76	0.0	0.04	19.03	0.00	2.490	9.40	8.82	8.7	91.3	0.0	-0.14	0.62	0.60	0.81	0.81	8048	904	8	0	12	0	0	logfile
✔	3J5R	5777	2024-09-27	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.36	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	7.3	0.004	0.93	0.0	0.04	13.10	0.01	2.267	20.44	0.00	6.6	93.1	0.3	0.01	1.78	0.67	0.52	—	17564	2324	8	0	44	0	0	logfile
✔	8PWH	17993	2024-09-26	2023-07-20	3.17	3.98	—	3.7	0.004	0.64	0.0	0.05	14.69	0.00	2.087	15.50	4.29	7.5	92.4	0.1	-1.53	0.84	0.76	2.00	3.7	0.004	0.70	0.0	0.05	14.25	0.01	2.325	10.86	3.27	6.9	93.1	0.1	-1.33	0.57	0.84	0.77	1.60	11535	1494	8	0	9	0	0	logfile
✔	7DBP	30161	2024-09-26	2020-10-21	4.5	5.32	—	4.3	0.003	0.45	0.0	0.03	27.26	0.00	2.226	8.54	0.57	4.4	94.9	0.7	-0.94	0.87	0.76	—	4.3	0.006	0.67	0.0	0.04	29.94	0.00	2.391	18.08	0.00	3.8	96.2	0.0	0.99	2.52	0.90	0.74	—	13801	837	11	350	0	0	0	logfile
✔	6Y1A	10669	2024-09-23	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.006	0.81	0.0	0.04	11.00	0.00	2.023	17.13	0.60	7.6	92.4	0.0	-4.28	1.49	0.56	0.75	—	2960	400	32	0	16	0	0	logfile
✔	7D90	30616	2024-09-26	2020-10-12	3.6	3.73	—	3.6	0.007	1.06	0.0	0.06	10.07	0.01	2.028	6.44	0.14	8.4	91.6	0.0	-5.00	0.63	0.72	2.03	3.6	0.003	0.79	0.0	0.05	14.35	0.00	2.522	11.07	3.06	6.0	94.0	0.0	-0.88	0.91	0.63	0.73	0.92	13686	1760	4	0	4	0	0	logfile
✔	6Y1Z	10673	2024-09-27	2020-02-14	2.82	3.48	—	3.3	0.003	0.58	0.0	0.05	15.31	0.00	2.325	3.51	2.49	2.4	97.6	0.0	-1.37	0.66	0.79	2.66	3.3	0.003	0.58	0.0	0.04	13.76	0.00	2.532	4.17	1.99	2.5	97.5	0.0	1.22	0.51	0.59	0.73	2.47	16610	1930	25	0	35	0	0	logfile
✔	8HS2	34983	2024-09-23	2022-12-16	3.08	3.85	3.16	3.6	0.004	0.78	0.0	0.05	14.96	0.01	2.192	7.16	0.17	4.7	95.3	0.0	0.10	0.67	0.87	3.05	3.6	0.004	0.67	0.0	0.04	15.29	0.00	2.468	9.45	2.15	5.5	94.5	0.0	0.84	0.33	0.67	0.87	2.63	5456	716	3	0	0	0	0	logfile
✔	7CR1	30444	2024-09-24	2020-08-12	3.4	3.42	—	3.5	0.012	0.73	0.0	0.04	14.92	0.00	2.185	26.22	0.00	4.1	95.9	0.0	-2.00	0.59	0.82	3.14	3.5	0.003	0.60	0.0	0.04	16.56	0.00	2.655	6.71	2.75	2.1	97.9	0.0	2.75	1.15	0.60	0.82	1.40	8220	1000	8	0	4	0	0	logfile
✔	7WYW	32896	2024-09-29	2022-02-16	3.8	3.91	—	3.8	0.011	1.45	0.0	0.07	20.11	0.01	1.861	10.73	10.30	8.7	90.7	0.6	-3.47	0.74	0.80	1.47	3.8	0.003	0.66	0.0	0.04	16.45	0.00	1.985	6.43	2.48	2.2	97.8	0.0	0.52	2.06	0.76	0.83	1.29	22606	2654	22	0	76	10	0	logfile
✔	7XKE	33249	2024-09-25	2022-04-19	2.9	3.36	2.83	3.2	0.006	0.56	0.0	0.04	12.85	0.00	2.213	9.98	0.24	4.2	95.8	0.0	0.17	0.70	0.83	3.16	3.2	0.003	0.62	0.0	0.04	15.47	0.00	2.500	7.95	1.31	3.8	96.2	0.0	0.37	0.47	0.71	0.85	3.00	7922	1009	6	0	1	1	0	logfile

• Page 1 of 506
• next →