Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GDC	29946	2024-09-24	2023-03-03	3.5	2.32	3.47	3.6	0.012	1.46	10.0	0.12	13.13	0.01	2.289	9.08	0.62	8.5	91.5	0.0	-3.62	0.72	0.67	2.49	2.1	0.002	0.61	0.0	0.04	14.55	0.00	2.600	5.34	2.48	2.2	97.8	0.0	-0.18	1.12	0.72	0.68	1.70	5657	810	5	0	1	0	0	logfile
✔	8K8J	36951	2024-09-24	2023-07-30	2.88	3.12	—	3.1	0.004	0.58	0.0	0.04	15.12	0.00	2.190	9.34	0.11	5.3	94.7	0.0	0.30	0.66	0.84	3.80	3.1	0.002	0.55	0.0	0.04	16.88	0.00	2.518	7.25	2.03	4.4	95.6	0.0	0.81	0.38	0.65	0.84	3.16	8155	1031	6	0	1	0	0	logfile
✔	8C81	16468	2024-09-27	2023-01-18	3.3	3.77	3.41	3.7	0.004	0.61	0.0	0.05	16.33	0.00	2.225	3.97	0.00	3.7	96.3	0.0	0.64	0.67	0.82	2.60	3.7	0.002	0.53	0.0	0.04	15.49	0.00	2.467	3.11	0.94	3.6	96.4	0.0	1.01	0.28	0.74	0.87	1.84	15709	1938	8	0	6	0	0	logfile
✔	8W9V	37382	2024-09-24	2023-09-05	2.9	2.87	2.95	3.0	0.003	0.48	0.0	0.04	14.07	0.00	2.231	5.07	0.93	1.8	98.2	0.0	1.62	0.61	0.85	3.43	3.0	0.002	0.47	0.0	0.04	14.59	0.00	2.605	5.15	2.27	1.2	98.8	0.0	2.80	0.25	0.57	0.83	3.16	6574	852	4	0	6	0	0	logfile
✔	8HRL	34977	2024-09-24	2022-12-15	2.8	3.03	2.84	3.1	0.004	0.73	0.0	0.05	18.12	0.01	2.124	7.19	1.59	4.7	95.3	0.0	-1.16	0.64	0.73	1.48	3.1	0.002	0.57	0.0	0.04	18.36	0.00	2.592	3.52	2.02	2.8	97.2	0.0	0.04	0.49	0.61	0.72	1.41	6412	791	2	0	0	0	0	logfile
✔	8UR3	42480	2024-09-25	2023-10-25	2.61	3.41	2.64	3.1	0.003	0.51	0.0	0.04	13.47	0.00	2.253	4.15	0.00	2.7	97.3	0.0	-0.63	0.86	0.85	3.65	3.1	0.002	0.49	0.0	0.04	15.10	0.00	2.499	5.77	0.87	2.8	97.2	0.0	1.07	0.54	0.87	0.86	3.24	9376	1158	2	0	0	0	0	logfile
✔	8F0o	28775	2024-09-30	2022-11-03	2.99	4.40	3.26	3.0	0.005	0.80	0.0	0.05	17.63	0.01	2.274	3.93	0.00	5.1	94.9	0.0	-2.73	0.81	0.83	1.70	3.0	0.002	0.71	0.0	0.04	15.86	0.00	2.410	8.41	0.74	4.3	95.7	0.0	0.29	0.52	0.81	0.84	1.48	24030	2968	16	0	38	0	0	logfile
✔	8EQF	28537	2024-09-23	2022-10-07	3.16	2.26	3.09	2.1	0.005	0.57	0.0	0.04	14.57	0.00	1.998	5.82	0.00	5.5	94.5	0.0	-0.38	0.75	0.81	3.52	2.0	0.002	0.56	0.0	0.04	14.12	0.00	2.422	4.44	1.10	2.9	97.1	0.0	0.04	0.87	0.76	0.81	3.59	3348	422	4	0	2	0	0	logfile
✔	8HMF	34898	2024-09-30	2022-12-03	4.6	5.14	4.45	4.5	0.002	0.60	0.0	0.04	14.45	0.00	2.183	11.55	0.04	4.0	95.8	0.2	0.23	0.90	0.79	—	4.5	0.002	0.59	0.0	0.04	14.54	0.00	2.412	10.40	0.00	4.4	95.5	0.2	0.78	0.58	0.91	0.84	—	25330	3135	4	0	2	0	0	logfile
✔	8TiB	41283	2024-09-23	2023-07-19	3.47	3.73	3.31	3.7	0.003	0.62	0.0	0.05	16.69	0.00	2.328	7.86	0.34	6.2	93.8	0.0	-1.60	0.32	0.87	1.51	3.7	0.002	0.50	0.0	0.04	16.81	0.00	2.482	6.03	4.42	4.9	94.8	0.3	-0.79	0.25	0.32	0.87	1.64	2667	393	3	0	0	0	0	logfile
✔	8RU0	19501	2024-09-26	2024-01-29	3.08	3.41	3.21	3.4	0.002	0.49	0.0	0.04	16.57	0.00	2.068	6.05	0.24	2.1	97.8	0.1	-0.20	0.64	0.83	2.63	3.4	0.002	0.55	0.0	0.04	16.27	0.00	2.026	4.89	2.41	2.6	97.3	0.1	0.61	1.31	0.64	0.83	2.24	11660	1476	8	0	11	0	0	logfile
✔	8KHP	37247	2024-09-27	2023-08-22	3.67	4.90	3.71	3.6	0.002	0.62	0.0	0.04	11.29	0.00	2.213	5.29	0.00	3.2	96.3	0.4	1.44	0.86	0.80	1.59	3.6	0.002	0.53	0.0	0.04	12.67	0.00	2.485	3.96	0.65	3.8	96.1	0.1	1.62	1.27	0.90	0.87	1.29	16023	2702	6	0	0	0	0	logfile
✔	8C20	16386	2024-09-26	2022-12-21	3.5	4.44	3.33	3.9	0.004	0.63	1.0	0.04	15.26	0.00	2.203	6.69	0.53	4.6	95.1	0.3	0.53	0.64	0.67	1.71	4.0	0.002	0.56	0.0	0.04	16.04	0.00	2.340	50.48	3.42	3.5	96.5	0.0	1.73	2.51	0.66	0.80	1.94	11908	1408	6	0	2	0	207	logfile
✔	8EKS	28212	2024-09-28	2022-09-21	3.1	3.47	3.18	3.5	0.003	0.62	0.0	0.04	13.55	0.00	2.215	3.64	0.00	1.9	98.1	0.0	-2.29	0.72	0.84	3.39	3.5	0.002	0.46	0.0	0.03	14.92	0.00	2.629	4.40	0.91	1.8	98.2	0.0	2.23	0.37	0.65	0.82	3.14	20484	2504	8	0	4	0	0	logfile
✔	7YFC	33785	2024-09-25	2022-07-08	3.0	3.40	3.05	3.4	0.005	0.66	0.0	0.04	18.01	0.00	2.198	5.98	0.09	2.5	97.5	0.0	1.05	0.65	0.82	3.01	3.4	0.002	0.54	0.0	0.04	18.03	0.00	2.487	4.75	4.04	2.7	97.3	0.0	1.06	1.28	0.68	0.85	2.94	9882	1262	7	0	2	0	0	logfile
✔	8FTK	29439	2024-09-24	2023-01-12	4.56	5.56	4.86	4.4	0.002	0.58	0.0	0.04	4.66	0.00	2.125	4.21	0.00	5.9	94.1	0.0	0.74	0.85	0.81	—	4.4	0.002	0.54	0.0	0.04	4.64	0.00	2.329	1.93	0.00	8.3	91.7	0.0	0.47	1.25	0.86	0.82	—	7840	1584	1	0	0	0	0	logfile
✔	8Qi7	18436	2024-09-27	2023-09-11	2.9	3.13	2.98	3.2	0.004	0.65	0.0	0.04	9.14	0.00	2.275	2.18	0.79	6.3	93.4	0.2	-3.83	0.69	0.88	5.75	3.2	0.002	0.60	0.0	0.04	13.56	0.00	2.613	2.28	0.33	2.1	97.9	0.0	0.74	0.95	0.70	0.87	3.88	14609	1848	8	0	0	117	0	logfile
✔	8QCB	18328	2024-09-25	2023-08-25	2.8	2.99	2.84	3.0	0.002	0.45	0.0	0.04	12.78	0.00	2.288	3.19	0.00	2.5	97.5	0.0	1.02	0.61	0.76	3.54	3.0	0.002	0.50	0.0	0.04	15.52	0.00	2.484	3.42	1.97	2.2	97.8	0.0	1.23	0.90	0.75	0.88	2.83	11423	1506	5	0	0	0	0	logfile
✔	8QJJ	18448	2024-09-24	2023-09-13	3.35	3.35	3.18	3.3	0.012	1.98	0.0	0.10	12.60	0.01	2.538	0.43	0.00	2.3	97.7	0.0	-2.06	0.33	0.77	5.23	3.3	0.002	0.57	0.0	0.05	16.15	0.00	2.543	2.99	0.51	4.1	95.9	0.0	-1.52	2.30	0.33	0.78	4.36	7032	450	6	0	0	0	3588	logfile
✔	8PSU	17862	2024-09-27	2023-07-13	3.18	2.77	3.14	3.1	0.003	0.45	0.0	0.03	17.34	0.00	1.917	3.46	0.00	2.2	97.6	0.2	1.54	0.71	0.82	3.55	3.1	0.002	0.47	0.0	0.03	17.33	0.00	2.423	1.92	0.60	2.1	97.8	0.1	1.51	1.13	0.72	0.83	3.33	16169	971	6	29	1	0	7957	logfile

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