Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TYX	26197	2024-09-25	2022-02-14	2.55	3.24	2.69	3.2	0.004	0.52	0.0	0.04	13.25	0.00	2.231	4.31	1.62	1.8	98.2	0.0	-3.16	0.59	0.75	3.60	3.2	0.002	0.57	0.0	0.04	15.35	0.00	2.404	4.80	2.76	1.8	98.2	0.0	1.03	0.58	0.46	0.67	3.41	10219	1269	9	0	14	0	0	logfile
✔	7MCS	23757	2024-09-29	2021-04-02	3.56	3.29	—	3.5	0.006	0.86	1.0	0.05	17.00	0.01	1.994	6.36	0.04	4.3	95.6	0.1	-1.38	0.71	0.78	2.49	3.4	0.002	0.57	0.0	0.04	17.69	0.00	1.978	6.64	2.09	3.2	96.8	0.0	-0.02	1.86	0.72	0.79	1.82	21600	2619	15	30	12	0	0	logfile
✔	6RJ9	4900	2024-09-26	2019-04-26	3.2	3.37	—	3.3	0.006	0.78	0.0	0.05	17.39	0.01	2.292	2.59	0.28	6.7	93.3	0.0	-3.87	0.67	0.86	2.60	3.3	0.002	0.52	0.0	0.04	18.15	0.00	2.477	4.43	2.07	3.6	96.4	0.0	-0.23	0.96	0.66	0.87	1.90	11874	1202	5	97	0	0	0	logfile
✔	6RJG	4904	2024-09-26	2019-04-26	3.2	3.36	—	3.3	0.008	0.96	0.0	0.06	18.84	0.01	2.297	2.15	0.10	6.8	93.2	0.0	-3.61	0.65	0.85	3.05	3.3	0.002	0.56	0.0	0.04	19.29	0.00	2.492	4.18	2.20	4.7	95.3	0.0	0.17	0.49	0.65	0.86	2.26	12220	1180	6	123	0	0	0	logfile
✔	7FD9	31537	2024-09-26	2021-07-16	4.0	4.34	3.85	3.8	0.007	1.28	0.0	0.13	17.54	0.00	2.266	9.05	0.00	6.4	93.6	0.0	-0.84	0.71	0.80	—	3.8	0.002	0.62	0.0	0.04	14.77	0.00	2.594	9.19	1.50	4.0	96.0	0.0	0.00	1.36	0.72	0.81	—	11476	1534	4	0	4	0	0	logfile
✔	7MGM	23829	2024-09-30	2021-04-12	3.1	3.35	3.11	3.0	0.004	0.55	0.0	0.04	14.45	0.00	1.874	5.80	0.04	2.4	97.6	0.0	0.78	0.87	0.89	2.62	3.0	0.002	0.46	0.0	0.04	15.11	0.00	1.982	4.07	0.44	2.1	97.9	0.0	1.59	0.23	0.87	0.90	2.10	24079	2964	4	0	6	0	0	logfile
✔	6U8A	20686	2024-09-28	2019-09-04	3.4	3.52	3.45	3.5	0.008	0.97	0.0	0.05	15.90	0.01	2.296	3.45	0.37	3.6	96.4	0.0	-3.94	0.68	0.82	2.60	3.5	0.002	0.59	0.0	0.04	16.75	0.00	2.594	7.11	1.96	1.4	98.6	0.0	1.40	0.58	0.68	0.83	2.27	20032	2468	7	0	4	0	0	logfile
✔	7SiP	25147	2024-09-24	2021-10-14	3.0	3.27	—	3.3	0.011	1.17	0.0	0.04	17.47	0.01	2.313	3.17	0.00	0.9	99.1	0.0	0.93	0.63	0.81	2.85	3.3	0.002	0.50	0.0	0.04	15.61	0.00	2.596	2.46	2.27	1.3	98.7	0.0	1.79	0.99	0.58	0.81	2.63	7560	892	12	0	36	20	0	logfile
✔	7Y6V	33649	2024-09-25	2022-06-21	3.3	4.21	3.47	3.6	0.004	0.74	0.0	0.06	17.91	0.00	2.149	10.16	0.00	5.7	94.0	0.2	-0.46	0.64	0.82	2.69	3.6	0.002	0.65	0.0	0.05	14.35	0.00	2.419	7.15	1.24	5.6	94.1	0.2	-0.54	0.35	0.64	0.83	2.56	9988	1224	16	0	45	0	0	logfile
✔	7RW8	24710	2024-09-26	2021-08-19	3.5	4.25	3.47	3.8	0.004	0.58	0.0	0.04	13.41	0.00	2.069	5.73	0.00	3.5	96.5	0.0	0.99	0.80	0.72	2.46	3.8	0.002	0.52	0.0	0.04	14.66	0.00	2.364	4.95	0.65	3.2	96.8	0.0	2.17	0.98	0.89	0.85	1.83	12572	1712	4	0	0	0	0	logfile
✔	7Y6U	33648	2024-09-25	2022-06-21	3.2	4.00	3.27	3.5	0.004	0.69	0.0	0.05	18.86	0.00	2.170	7.45	0.00	5.5	94.2	0.3	-0.28	0.66	0.83	3.27	3.5	0.002	0.62	0.0	0.05	14.47	0.00	2.514	6.12	1.91	4.8	94.8	0.3	-0.42	1.11	0.66	0.84	2.80	9915	1224	13	0	40	0	0	logfile
✔	7RTo	24685	2024-09-24	2021-08-13	3.8	3.83	—	3.8	0.004	0.82	0.0	0.05	14.32	0.00	2.200	8.55	0.16	5.6	94.4	0.0	1.09	0.32	0.76	2.41	3.8	0.002	0.62	0.0	0.04	16.54	0.00	2.453	5.78	1.97	4.9	95.1	0.0	1.61	0.49	0.32	0.77	1.74	6607	888	3	0	0	0	0	logfile
✔	8FMX	29299	2024-09-25	2022-12-26	3.37	4.30	3.60	3.9	0.005	0.93	0.0	0.06	14.52	0.01	2.404	0.43	0.00	2.6	97.4	0.0	-1.06	0.89	0.86	2.70	3.9	0.002	0.57	0.0	0.04	14.14	0.00	2.512	3.70	0.35	2.6	97.4	0.0	0.98	1.23	0.88	0.87	2.29	10329	1335	9	0	12	0	0	logfile
✔	7LRC	23494	2024-09-24	2021-02-16	2.97	4.17	2.92	3.5	0.002	0.50	0.0	0.04	8.07	0.01	1.795	5.33	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.002	0.60	0.0	0.04	11.80	0.00	2.002	5.98	0.60	0.3	99.7	0.0	3.60	1.21	0.76	0.85	2.95	6202	762	6	0	6	0	0	logfile
✔	7ZJH	14748	2024-09-28	2022-04-11	3.39	3.74	3.43	3.6	0.002	0.52	0.0	0.04	11.15	0.00	2.223	5.18	2.73	7.5	92.4	0.1	-0.54	0.68	0.81	1.89	3.6	0.002	0.65	0.0	0.04	14.38	0.00	2.477	5.97	2.34	7.7	92.1	0.2	0.09	0.98	0.69	0.83	1.52	18984	2344	4	0	0	0	0	logfile
✔	6U88	20682	2024-09-28	2019-09-04	3.2	3.34	3.28	3.3	0.009	1.05	0.0	0.06	16.10	0.01	2.328	4.10	0.74	3.2	96.8	0.0	-4.92	0.68	0.82	2.57	3.4	0.002	0.58	0.0	0.04	16.96	0.00	2.375	6.81	2.72	2.1	97.9	0.0	1.19	1.58	0.69	0.84	2.28	20004	2444	8	0	4	0	0	logfile
✔	7N16	24114	2024-09-28	2021-05-27	3.2	3.17	—	3.5	0.008	1.18	0.0	0.06	18.87	0.01	2.027	4.59	0.86	5.7	94.3	0.0	-4.54	0.63	0.84	2.47	3.5	0.002	0.57	0.0	0.04	16.92	0.00	2.328	7.58	2.20	5.5	94.5	0.0	0.76	1.01	0.63	0.85	2.03	17357	2056	8	0	17	0	0	logfile
✔	7AG8	11776	2024-09-25	2020-09-21	2.68	3.30	2.85	3.2	0.005	0.65	0.0	0.04	13.13	0.00	2.220	6.49	0.37	4.2	95.7	0.1	-0.60	0.65	0.79	4.14	3.2	0.002	0.55	0.0	0.04	14.38	0.00	2.418	4.70	0.92	3.3	96.6	0.1	0.60	0.88	0.68	0.82	3.43	10922	1417	4	0	2	0	0	logfile
✔	6UUN	20883	2024-09-24	2019-10-30	3.0	3.16	2.93	3.2	0.005	0.73	0.0	0.05	11.92	0.00	2.226	8.93	0.45	3.6	96.4	0.0	-1.59	0.63	0.81	3.14	3.2	0.002	0.55	0.0	0.04	15.76	0.00	2.478	5.82	2.95	2.2	97.8	0.0	0.49	0.55	0.68	0.86	2.81	8980	1202	7	0	0	0	0	logfile
✔	7X8A	33056	2024-09-27	2022-03-11	2.8	3.34	2.83	3.2	0.003	0.53	0.0	0.04	15.01	0.00	2.145	9.18	0.00	5.5	94.4	0.1	0.22	0.79	0.83	3.46	3.2	0.002	0.56	0.0	0.04	17.03	0.00	2.455	7.71	0.93	4.8	95.2	0.1	0.65	0.36	0.77	0.84	2.84	16031	1940	4	33	4	0	0	logfile

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