Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oPN	20150	2024-09-27	2019-04-25	3.5	4.29	3.61	3.9	0.022	1.78	0.0	0.10	12.35	0.01	2.024	2.48	0.00	2.0	98.0	0.0	0.59	0.70	0.73	2.02	3.9	0.004	0.76	0.0	0.04	13.90	0.00	2.477	10.74	2.90	4.0	96.0	0.0	-0.07	1.36	0.70	0.74	1.56	14241	1713	21	0	51	0	0	logfile
✔	6X5B	22048	2024-09-28	2020-05-25	3.6	3.79	3.55	3.7	0.021	1.75	0.0	0.13	11.15	0.01	2.017	0.57	0.00	2.5	97.5	0.0	0.48	0.70	0.74	2.36	3.7	0.003	0.74	0.0	0.05	14.93	0.00	2.286	10.34	3.17	5.4	94.6	0.0	-0.38	0.92	0.70	0.76	1.90	20232	2487	27	0	51	0	0	logfile
✔	6Z11	11026	2024-09-30	2020-05-11	3.36	3.67	3.53	3.4	0.005	0.61	0.0	0.04	14.18	0.00	1.906	7.99	0.04	11.0	89.0	0.0	-5.38	0.84	0.78	2.17	3.4	0.003	0.66	0.0	0.04	16.08	0.00	2.011	7.32	1.55	4.9	95.1	0.0	-0.50	1.10	0.89	0.86	1.95	23948	3077	7	0	3	0	0	logfile
✔	7WBJ	32401	2024-09-24	2021-12-16	3.42	3.69	—	3.7	0.004	0.61	0.0	0.05	14.59	0.00	1.264	12.09	0.21	4.9	95.1	0.0	-1.06	0.65	0.74	2.02	3.7	0.003	0.57	0.0	0.04	16.35	0.00	2.492	8.54	2.57	3.5	96.5	0.0	-0.34	0.38	0.64	0.76	1.43	8989	1146	6	0	0	0	0	logfile
✔	8CTK	26993	2024-09-23	2022-05-15	3.52	3.87	3.55	3.9	0.003	0.69	0.0	0.05	14.37	0.00	2.347	4.69	0.00	3.8	96.2	0.0	-1.07	0.54	0.70	0.86	3.9	0.004	0.67	0.0	0.04	15.23	0.00	2.470	7.44	3.48	3.8	96.2	0.0	-0.16	1.08	0.52	0.72	0.86	3042	376	2	0	0	0	0	logfile
✔	7MZ5	24083	2024-09-27	2021-05-24	2.76	2.90	2.75	3.0	0.005	0.72	4.0	0.05	11.21	0.00	2.138	1.25	1.03	4.1	95.5	0.4	1.27	0.56	0.80	2.22	3.0	0.003	0.62	0.0	0.04	15.69	0.00	2.290	8.67	1.80	5.9	94.1	0.0	1.64	0.71	0.55	0.82	1.65	14291	1724	8	0	7	0	0	logfile
✔	7TYL	26184	2024-09-24	2022-02-13	3.3	3.46	3.18	3.5	0.003	0.59	0.0	0.04	12.73	0.00	2.245	6.53	0.43	1.8	98.1	0.2	-2.52	0.61	0.67	2.72	3.5	0.003	0.58	0.0	0.04	15.03	0.00	2.440	6.70	1.91	3.6	96.4	0.0	0.39	0.44	0.64	0.79	2.33	8978	1156	7	0	1	0	0	logfile
✔	6C23	7334	2024-09-26	2018-01-05	3.9	3.96	3.82	3.9	0.013	1.59	6.0	0.11	12.20	0.01	1.020	11.36	1.02	14.7	83.7	1.6	-4.76	0.72	0.82	2.32	3.9	0.004	0.85	0.0	0.05	15.93	0.00	2.257	13.33	3.76	10.9	88.9	0.2	-2.41	1.21	0.72	0.77	1.91	13440	1688	12	0	135	0	0	logfile
✔	6CE9	7462	2024-09-25	2018-02-11	4.3	4.83	—	4.4	0.008	1.06	0.0	0.06	11.76	0.01	2.314	7.35	0.00	12.6	87.1	0.3	-3.39	0.86	0.83	—	4.3	0.004	0.76	0.0	0.05	11.19	0.00	2.392	12.10	0.00	10.8	89.2	0.0	-2.03	1.38	0.87	0.84	—	10782	1286	20	0	30	0	0	logfile
✔	6U8A	20686	2024-09-28	2019-09-04	3.4	3.52	3.45	3.5	0.008	0.97	0.0	0.05	15.90	0.01	2.296	3.45	0.37	3.6	96.4	0.0	-3.94	0.68	0.82	2.60	3.5	0.002	0.59	0.0	0.04	16.75	0.00	2.594	7.11	1.96	1.4	98.6	0.0	1.40	0.58	0.68	0.83	2.27	20032	2468	7	0	4	0	0	logfile
✔	8F76	28896	2024-09-24	2022-11-18	3.1	3.33	3.05	3.3	0.005	0.85	0.0	0.05	14.68	0.01	2.245	6.25	0.00	3.2	96.8	0.0	-1.19	0.68	0.83	3.50	3.4	0.003	0.55	0.0	0.04	16.15	0.00	2.553	7.48	2.93	2.8	97.2	0.0	0.67	0.38	0.64	0.85	2.90	8170	1038	6	0	1	0	0	logfile
✔	6X97	22103	2024-09-28	2020-06-02	3.65	4.17	3.77	4.1	0.022	1.77	0.0	0.14	11.60	0.01	2.496	0.46	0.30	2.1	97.9	0.0	0.36	0.77	0.80	2.77	4.1	0.003	0.71	0.0	0.04	14.56	0.00	2.472	8.48	2.30	4.5	95.5	0.0	-0.12	0.85	0.77	0.81	2.42	18873	2319	30	0	60	0	0	logfile
✔	8D9G	27261	2024-09-27	2022-06-09	2.57	2.97	2.74	2.9	0.010	0.86	0.0	0.05	18.99	0.01	2.036	11.14	5.96	7.0	92.8	0.2	-2.52	0.72	0.78	2.47	2.9	0.003	0.63	0.0	0.04	19.22	0.00	2.305	5.99	1.79	4.0	96.0	0.0	0.66	1.69	0.68	0.81	2.72	17148	1965	5	59	4	0	0	logfile
✔	8QQU	18605	2024-09-25	2023-10-06	2.9	3.10	2.97	3.1	0.004	0.67	0.0	0.05	13.97	0.00	2.111	1.46	0.00	3.5	96.5	0.0	0.03	0.64	0.86	3.91	3.1	0.003	0.58	0.0	0.04	17.98	0.00	2.453	5.29	2.15	2.7	97.3	0.0	1.12	1.09	0.66	0.88	3.25	10715	1273	4	32	0	0	0	logfile
✔	6P62	20259	2024-09-28	2019-05-31	3.57	3.68	3.62	3.6	0.023	1.81	0.0	0.10	12.69	0.01	2.272	1.22	0.15	4.6	95.4	0.0	-0.40	0.75	0.82	3.69	3.6	0.003	0.71	0.0	0.04	13.24	0.00	2.345	6.75	2.80	6.5	93.5	0.0	-1.06	1.32	0.74	0.82	2.89	19203	2334	30	0	84	0	0	logfile
✔	7ZC4	14619	2024-09-26	2022-03-25	3.24	2.31	3.25	3.4	0.003	0.66	0.0	0.04	15.19	0.00	2.152	12.98	0.00	3.6	96.4	0.0	2.81	0.64	0.60	1.74	3.4	0.003	0.63	0.0	0.04	16.53	0.00	2.588	11.33	1.30	3.0	97.0	0.0	2.29	1.15	0.68	0.65	1.77	7272	926	1	0	0	0	0	logfile
✔	7PCH	13320	2024-09-25	2021-08-03	2.89	3.82	2.93	3.4	0.012	1.54	0.0	0.10	13.62	0.01	2.343	0.97	0.55	3.7	96.3	0.0	1.22	0.89	0.83	3.70	3.4	0.003	0.66	0.0	0.04	14.32	0.00	2.465	4.18	0.64	1.0	99.0	0.0	2.50	0.90	0.92	0.91	3.74	10798	1254	16	0	4	510	0	logfile
✔	8E3S	27871	2024-09-23	2022-08-17	3.1	4.11	3.27	3.9	0.003	0.59	0.0	0.04	13.23	0.00	2.185	10.30	0.00	3.6	96.4	0.0	0.13	0.79	0.75	2.95	3.9	0.003	0.61	0.0	0.04	15.10	0.00	2.599	6.82	1.35	3.0	97.0	0.0	0.02	1.00	0.78	0.75	2.49	4072	503	2	0	1	0	0	logfile
✔	7LCJ	23275	2024-09-23	2021-01-11	2.82	3.02	2.78	3.1	0.011	1.19	3.0	0.08	13.41	0.01	2.216	8.89	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.003	0.53	0.0	0.04	15.48	0.00	2.605	3.27	2.33	2.1	97.9	0.0	2.65	1.70	0.48	0.81	2.39	3264	390	2	0	1	17	0	logfile
✔	7M7B	23709	2024-09-23	2021-03-27	2.95	3.73	2.93	3.1	0.012	1.87	5.0	0.11	13.02	0.02	2.512	0.10	0.00	3.5	96.5	0.0	-0.73	0.62	0.86	4.80	3.1	0.004	0.67	0.0	0.05	14.06	0.00	2.559	4.67	0.37	2.9	97.1	0.0	0.27	1.32	0.64	0.89	3.85	4898	635	4	0	2	0	0	logfile

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