Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CAQ	16532	2024-09-23	2023-01-24	2.3	2.91	2.61	2.7	0.007	1.18	0.0	0.07	12.14	0.01	2.606	1.37	1.52	5.5	94.5	0.0	-3.61	0.48	0.92	7.17	2.7	0.008	0.72	0.0	0.05	14.17	0.00	2.529	2.05	0.30	2.5	97.5	0.0	-2.02	0.58	0.47	0.93	6.67	2870	375	5	0	0	0	0	logfile
✔	8SL1	40571	2024-09-24	2023-04-20	3.13	3.37	3.20	3.4	0.003	0.61	0.0	0.06	16.40	0.00	2.223	8.71	0.68	5.0	95.0	0.0	-0.41	0.64	0.73	2.11	3.4	0.003	0.59	0.0	0.04	16.74	0.00	2.273	7.85	2.59	4.9	95.1	0.0	0.07	0.36	0.63	0.73	2.20	6608	843	3	0	6	1	0	logfile
✔	8TZR	41767	2024-09-25	2023-08-27	3.5	4.05	3.67	4.0	0.006	0.84	0.0	0.05	16.98	0.01	2.229	6.61	0.53	4.5	95.5	0.0	-0.18	0.55	0.74	1.80	4.0	0.003	0.66	0.0	0.04	16.05	0.00	2.432	7.87	2.99	4.4	95.6	0.0	0.26	0.93	0.56	0.75	1.78	8821	1079	6	0	9	0	0	logfile
✔	7YFC	33785	2024-09-25	2022-07-08	3.0	3.40	3.05	3.4	0.005	0.66	0.0	0.04	18.01	0.00	2.198	5.98	0.09	2.5	97.5	0.0	1.05	0.65	0.82	3.01	3.4	0.002	0.54	0.0	0.04	18.03	0.00	2.487	4.75	4.04	2.7	97.3	0.0	1.06	1.28	0.68	0.85	2.94	9882	1262	7	0	2	0	0	logfile
✔	8FXB	29530	2024-09-24	2023-01-24	3.1	3.37	3.14	3.5	0.011	1.21	1.0	0.07	10.52	0.01	2.024	5.30	0.59	3.2	96.4	0.4	-0.59	0.64	0.70	2.98	3.5	0.005	0.71	0.0	0.04	14.75	0.00	2.496	6.34	1.54	4.6	95.4	0.0	0.11	1.19	0.65	0.76	2.55	7912	976	6	0	7	0	0	logfile
✔	8F1C	28793	2024-09-30	2022-11-04	2.92	3.13	2.93	3.1	0.004	0.53	0.0	0.04	11.03	0.00	2.225	3.26	0.61	7.0	93.0	0.0	0.84	0.65	0.84	4.27	3.2	0.003	0.54	0.0	0.04	13.85	0.00	2.412	2.86	0.92	6.4	93.6	0.0	1.05	0.50	0.66	0.86	2.82	25116	1576	8	0	16	0	12184	logfile
✔	8C9X	16513	2024-09-26	2023-01-23	2.3	3.14	2.24	2.8	0.004	0.68	0.0	0.05	17.44	0.00	2.143	9.34	2.46	3.1	96.9	0.0	-1.03	0.87	0.92	4.69	2.8	0.006	1.08	2.0	0.06	17.03	0.00	2.220	7.40	2.89	4.4	95.6	0.0	-0.81	0.38	0.82	0.91	5.14	13485	1635	20	0	20	0	0	logfile
✔	8CAU	16534	2024-09-26	2023-01-24	3.4	4.09	3.51	3.8	0.003	0.52	0.0	0.04	16.19	0.00	2.033	21.48	0.14	8.4	91.6	0.0	-3.17	0.90	0.89	4.04	3.8	0.005	0.79	0.0	0.05	15.42	0.00	2.467	6.11	1.06	8.2	91.8	0.0	-1.78	1.01	0.89	0.92	3.61	13545	1635	20	0	25	0	0	logfile
✔	8PoG	17791	2024-09-23	2023-07-04	4.15	4.36	4.10	4.3	0.003	0.59	0.0	0.04	15.83	0.01	2.242	5.44	0.00	2.3	97.7	0.0	0.40	0.77	0.80	—	4.3	0.003	0.57	0.0	0.04	16.33	0.00	2.571	4.62	0.00	3.1	96.9	0.0	2.26	1.93	0.76	0.79	—	4964	624	4	0	0	0	0	logfile
✔	8iDD	35364	2024-09-24	2023-02-12	4.0	4.48	3.92	4.1	0.004	1.02	0.0	0.06	12.75	0.00	2.302	5.78	0.24	4.7	95.3	0.0	-3.26	0.74	0.78	—	4.1	0.003	0.74	0.0	0.04	13.94	0.00	2.434	10.51	1.66	4.7	95.3	0.0	-0.92	0.46	0.74	0.80	—	8768	1199	7	0	2	0	0	logfile
✔	8K2X	36842	2024-09-25	2023-07-14	3.2	3.52	3.20	3.4	0.003	0.57	0.0	0.04	16.75	0.00	2.283	9.17	0.00	4.6	95.4	0.0	0.69	0.83	0.89	2.38	3.4	0.003	0.57	0.0	0.04	17.24	0.00	2.491	6.18	3.64	4.3	95.7	0.0	0.89	0.29	0.82	0.89	2.32	8900	1138	7	0	1	0	0	logfile
✔	8DN2	27552	2024-09-27	2022-07-10	3.9	4.27	4.08	4.3	0.003	0.65	0.0	0.05	12.21	0.01	1.224	14.88	2.83	5.9	94.0	0.1	0.00	0.62	0.81	2.07	4.3	0.003	0.77	0.0	0.05	14.78	0.00	2.442	11.13	5.20	5.1	94.9	0.0	0.28	0.98	0.58	0.80	1.74	14102	1696	12	0	40	0	0	logfile
✔	8FHH	29085	2024-09-28	2022-12-14	3.09	3.34	3.16	3.3	0.006	0.83	0.0	0.05	12.51	0.01	2.292	4.45	0.19	1.8	98.2	0.0	-2.13	0.68	0.90	3.44	3.3	0.003	0.50	0.0	0.04	14.99	0.00	2.519	4.70	1.57	1.2	98.8	0.0	1.89	0.51	0.65	0.89	3.02	19824	2424	8	0	12	0	0	logfile
✔	8EKS	28212	2024-09-28	2022-09-21	3.1	3.47	3.18	3.5	0.003	0.62	0.0	0.04	13.55	0.00	2.215	3.64	0.00	1.9	98.1	0.0	-2.29	0.72	0.84	3.39	3.5	0.002	0.46	0.0	0.03	14.92	0.00	2.629	4.40	0.91	1.8	98.2	0.0	2.23	0.37	0.65	0.82	3.14	20484	2504	8	0	4	0	0	logfile
✔	8TCF	41153	2024-09-24	2023-06-30	2.9	3.25	2.96	3.2	0.014	1.40	0.0	0.09	12.16	0.01	1.804	0.72	0.41	3.7	96.2	0.1	0.27	0.75	0.76	3.61	3.1	0.003	0.66	0.0	0.05	14.98	0.00	1.939	6.06	2.03	3.4	96.4	0.1	0.30	0.76	0.73	0.80	3.13	7050	878	9	0	22	0	0	logfile
✔	8F7T	28910	2024-09-26	2022-11-20	4.1	4.86	4.16	4.3	0.006	0.88	1.0	0.05	21.49	0.01	1.835	16.60	1.36	10.4	89.0	0.6	-2.43	0.77	0.71	—	4.4	0.003	0.80	0.0	0.05	14.35	0.00	2.374	13.38	0.14	8.1	91.5	0.4	-1.55	1.53	0.79	0.82	—	13326	1641	15	0	21	0	0	logfile
✔	8DN5	27555	2024-09-27	2022-07-10	3.63	3.95	3.73	3.9	0.004	0.73	0.0	0.05	11.89	0.01	0.981	14.52	1.52	6.4	93.4	0.2	-0.87	0.67	0.83	2.14	3.9	0.003	0.67	0.0	0.04	14.55	0.00	2.482	7.29	2.32	4.9	95.0	0.2	-0.12	0.95	0.62	0.83	1.85	14081	1689	13	0	47	0	0	logfile
✔	8TZL	41762	2024-09-28	2023-08-27	3.55	3.98	3.46	3.8	0.004	0.51	0.0	0.04	10.72	0.00	1.922	2.28	0.00	2.5	97.5	0.0	3.76	0.71	0.78	1.99	3.8	0.003	0.54	0.0	0.04	13.84	0.00	2.038	4.82	1.57	3.1	96.9	0.0	3.20	0.70	0.71	0.79	2.17	18875	1398	7	0	4	0	9042	logfile
✔	8TZo	41764	2024-09-25	2023-08-27	3.1	3.45	3.14	3.4	0.004	0.70	0.0	0.04	17.02	0.00	2.252	5.32	0.22	3.1	96.9	0.0	0.82	0.62	0.85	2.93	3.4	0.004	0.57	0.0	0.04	15.35	0.00	1.353	4.80	1.83	3.6	96.4	0.0	1.01	0.29	0.61	0.85	2.73	8737	1070	7	0	10	0	0	logfile
✔	8CE4	16598	2024-09-26	2023-02-01	2.7	3.26	2.57	3.0	0.004	0.63	0.0	0.04	18.89	0.01	2.159	10.18	2.61	4.6	95.4	0.1	-0.84	0.89	0.90	4.88	3.0	0.003	0.68	0.0	0.04	17.91	0.00	2.492	9.19	1.76	5.7	94.3	0.0	-1.00	0.88	0.85	0.92	4.57	13435	1645	20	0	20	0	0	logfile

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