Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TM1	41374	2024-09-23	2023-07-27	2.79	2.95	2.77	3.0	0.003	0.67	0.0	0.05	12.21	0.01	2.313	2.95	0.00	3.4	96.6	0.0	-1.40	0.76	0.81	4.05	2.9	0.003	0.61	0.0	0.04	16.33	0.00	2.515	3.85	3.05	2.7	97.3	0.0	-0.43	1.18	0.79	0.85	3.98	4536	569	4	0	0	0	0	logfile
✔	8JU0	36658	2024-09-23	2023-06-23	2.98	3.34	2.92	3.3	0.006	0.81	0.0	0.06	13.41	0.00	2.221	8.35	0.00	1.6	98.4	0.0	1.57	0.52	0.73	2.11	3.3	0.003	0.56	0.0	0.04	14.19	0.00	2.620	6.93	1.60	1.6	98.4	0.0	1.93	0.28	0.49	0.72	2.12	3199	431	2	0	1	0	0	logfile
✔	8VE1	43161	2024-09-23	2023-12-18	2.7	2.67	2.66	2.8	0.006	0.58	0.0	0.05	13.15	0.00	2.258	2.95	0.26	2.2	97.8	0.0	0.62	0.75	0.85	5.80	2.8	0.003	0.60	0.0	0.05	15.74	0.00	2.352	5.47	1.56	2.4	97.6	0.0	-0.15	0.39	0.76	0.87	5.33	3656	466	10	0	2	27	0	logfile
✔	8i9Q	35280	2024-09-23	2023-02-07	4.22	4.44	4.10	4.3	0.007	0.98	1.0	0.05	14.66	0.01	1.697	22.61	0.86	11.5	88.5	0.0	-3.94	0.49	0.68	—	4.3	0.004	0.81	0.0	0.05	14.19	0.00	2.431	13.29	0.00	10.0	90.0	0.0	-1.34	1.36	0.46	0.60	—	5179	675	2	0	0	0	0	logfile
✔	8QRU	18626	2024-09-23	2023-10-09	2.9	3.28	2.75	3.2	0.003	0.52	0.0	0.04	13.62	0.01	2.257	6.45	0.61	2.0	98.0	0.0	1.76	0.50	0.88	4.30	3.2	0.003	0.63	0.0	0.04	15.52	0.01	2.559	7.40	2.14	1.0	99.0	0.0	1.94	0.47	0.50	0.88	3.58	3093	416	2	0	0	0	0	logfile
✔	8JTS	36651	2024-09-23	2023-06-22	4.14	4.41	3.90	4.4	0.008	0.93	0.0	0.05	14.11	0.02	2.249	8.90	0.31	5.0	95.0	0.0	-0.32	0.53	0.67	—	4.4	0.003	0.69	0.0	0.04	14.21	0.00	2.481	9.82	0.00	5.3	94.7	0.0	1.16	1.14	0.54	0.67	—	3330	461	2	0	1	0	0	logfile
✔	8SKS	40566	2024-09-23	2023-04-20	2.91	3.52	2.94	3.4	0.004	0.55	0.0	0.04	11.98	0.00	1.880	7.37	0.00	3.1	96.9	0.0	0.81	0.82	0.84	5.54	3.4	0.004	0.59	0.0	0.04	15.05	0.00	1.990	4.91	3.16	3.6	96.4	0.0	1.05	1.15	0.82	0.84	5.20	6232	792	8	0	4	0	0	logfile
✔	8TER	41198	2024-09-23	2023-07-06	2.59	2.80	2.25	2.8	0.007	0.89	0.0	0.05	18.43	0.01	2.289	10.67	0.00	6.1	93.9	0.0	-4.34	0.66	0.90	5.78	2.8	0.008	0.70	0.0	0.05	20.10	0.00	2.655	3.52	6.38	5.6	94.4	0.0	-3.91	0.85	0.66	0.91	6.73	5780	700	40	0	0	240	0	logfile
✔	8AZ0	15728	2024-09-23	2022-09-05	3.4	3.10	3.36	3.6	0.006	0.74	0.0	0.05	8.05	0.01	2.611	0.94	0.00	7.7	92.3	0.0	-4.46	0.50	0.87	5.60	3.6	0.003	0.51	0.0	0.04	11.54	0.00	2.272	0.24	2.08	5.8	94.2	0.0	-5.01	0.50	0.46	0.85	4.92	2180	280	20	0	10	0	0	logfile
✔	8AZ2	15730	2024-09-23	2022-09-05	3.4	3.30	3.43	3.7	0.003	0.45	0.0	0.04	9.02	0.00	2.412	5.63	0.00	0.0	100.0	0.0	-2.98	0.52	0.85	6.33	3.6	0.007	0.66	0.0	0.05	11.59	0.00	2.330	2.11	1.56	3.8	96.2	0.0	-2.99	0.47	0.49	0.87	6.08	2935	395	30	0	15	0	0	logfile
✔	8XAV	38204	2024-09-23	2023-12-05	2.87	3.10	2.96	3.1	0.004	0.84	0.0	0.05	18.06	0.01	2.191	7.44	0.55	3.1	96.9	0.0	-2.35	0.57	0.71	2.67	3.1	0.005	0.59	0.0	0.05	18.17	0.00	2.414	9.74	3.89	3.3	96.7	0.0	-0.28	1.06	0.74	0.86	3.18	48264	5886	18	0	0	0	0	logfile
✔	8U3E	41859	2024-09-23	2023-09-07	3.19	3.64	3.08	3.6	0.009	0.69	0.0	0.05	13.04	0.00	2.280	5.97	0.00	6.4	93.6	0.0	-3.53	0.54	0.83	4.61	3.6	0.003	0.59	0.0	0.04	14.78	0.01	2.625	3.73	1.14	3.5	96.5	0.0	1.21	0.40	0.51	0.85	3.12	3338	427	1	0	0	0	0	logfile
✔	8AZ4	15753	2024-09-23	2022-09-05	2.2	2.27	2.10	2.2	0.006	0.72	0.0	0.05	10.22	0.00	2.292	1.89	0.00	7.7	92.3	0.0	-3.94	0.57	0.88	8.31	2.2	0.004	0.72	0.0	0.05	13.37	0.00	2.655	1.89	1.25	7.7	92.3	0.0	-4.01	0.49	0.59	0.91	7.97	2280	280	30	0	10	100	0	logfile
✔	8XD0	38261	2024-09-23	2023-12-10	2.83	3.06	1.35	3.0	0.009	1.13	0.0	0.07	16.46	0.01	2.449	4.66	2.35	3.1	96.9	0.0	1.32	0.46	0.88	3.52	3.0	0.005	0.57	0.0	0.05	17.88	0.00	2.551	5.71	1.47	2.9	96.9	0.2	1.47	0.83	0.45	0.91	3.74	3357	417	2	0	2	14	0	logfile
✔	8Y66	38968	2024-09-23	2024-02-01	3.28	3.92	3.35	3.9	0.006	0.76	0.0	0.05	14.11	0.01	2.223	10.92	0.26	3.4	96.6	0.0	1.27	0.45	0.67	1.39	3.9	0.004	0.66	0.0	0.04	16.29	0.00	2.485	7.24	3.65	2.4	97.6	0.0	1.71	0.35	0.47	0.70	1.20	3606	467	2	0	1	0	0	logfile
✔	8R8K	19002	2024-09-23	2023-11-29	3.41	3.66	3.37	3.7	0.003	0.49	0.0	0.04	15.09	0.00	2.145	4.83	0.23	2.6	97.4	0.0	-0.18	0.58	0.84	2.55	3.7	0.002	0.46	0.0	0.04	15.42	0.00	2.633	4.06	2.50	3.5	96.5	0.0	-0.17	0.31	0.59	0.85	2.65	4005	515	3	0	0	0	0	logfile
✔	8iEB	35377	2024-09-23	2023-02-15	3.03	2.34	3.03	3.0	0.008	0.91	0.0	0.05	15.36	0.01	2.198	5.16	0.00	3.3	96.7	0.0	0.96	0.73	0.79	2.39	2.9	0.003	0.69	1.0	0.04	16.08	0.00	2.552	7.79	1.63	2.7	97.3	0.0	2.41	0.40	0.73	0.79	1.49	4416	558	4	0	2	0	0	logfile
✔	8FEH	29027	2024-09-23	2022-12-06	3.28	4.31	3.36	3.4	0.008	1.02	0.0	0.07	14.17	0.01	2.317	7.23	1.83	7.1	92.9	0.0	-3.45	0.45	0.76	1.53	3.5	0.003	0.64	0.0	0.04	15.12	0.00	2.545	9.73	1.38	4.5	95.5	0.0	-1.57	2.58	0.47	0.88	2.31	1993	268	1	0	0	0	0	logfile
✔	8Ci8	16671	2024-09-23	2023-02-09	2.67	2.61	2.27	2.7	0.009	1.46	0.0	0.08	13.63	0.01	2.521	0.00	0.00	0.0	100.0	0.0	-4.96	0.64	0.83	3.28	2.7	0.004	0.63	0.0	0.04	16.74	0.00	2.608	9.06	6.93	1.1	98.9	0.0	-3.21	1.20	0.66	0.86	5.09	3430	485	25	0	0	0	0	logfile
✔	8HZB	35087	2024-09-23	2023-01-08	3.2	3.13	2.70	3.3	0.008	0.92	0.0	0.06	16.62	0.00	2.162	16.73	0.00	10.3	89.7	0.0	-4.16	0.34	0.74	2.17	3.3	0.003	0.61	0.0	0.05	18.29	0.00	2.544	6.89	4.00	10.5	89.5	0.0	-2.74	0.47	0.33	0.73	2.17	2976	432	6	0	0	0	0	logfile

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