Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R7N	24299	2024-09-23	2021-06-25	3.95	4.08	3.93	4.1	0.010	1.24	0.0	0.07	9.31	0.00	2.553	0.78	0.45	3.2	96.8	0.0	0.00	0.81	0.77	3.23	4.0	0.005	0.80	0.0	0.05	14.47	0.00	2.543	8.72	6.28	5.9	94.1	0.0	-1.07	1.32	0.84	0.81	2.58	2790	391	4	0	3	0	0	logfile
✔	6ZQi	11364	2024-09-23	2020-07-09	3.8	4.13	3.63	4.1	0.002	0.56	0.0	0.04	12.44	0.00	2.336	6.03	1.12	3.1	96.9	0.0	-2.14	0.67	0.78	0.85	4.1	0.003	0.78	0.0	0.05	15.74	0.00	2.334	7.64	4.10	4.5	95.5	0.0	-0.39	0.63	0.68	0.80	1.33	5032	655	4	0	1	0	0	logfile
✔	3J9D	6239	2024-09-23	2015-01-09	3.3	2.70	—	3.4	0.027	2.04	0.0	0.08	20.57	0.01	2.034	23.66	24.92	8.2	89.6	2.2	-3.64	0.81	0.89	2.90	3.3	0.022	0.84	0.0	0.04	17.95	0.00	2.320	14.54	6.01	7.4	92.2	0.4	-1.66	2.35	0.75	0.84	2.63	6086	746	2	0	1	0	0	logfile
✔	7ZZ4	15034	2024-09-23	2022-05-25	2.63	3.04	2.56	2.2	0.008	1.05	0.0	0.05	18.14	0.00	2.035	5.21	0.27	3.3	96.7	0.0	-0.79	0.86	0.84	4.14	2.2	0.003	0.56	0.0	0.04	17.50	0.00	1.918	6.99	1.06	3.7	96.3	0.0	0.98	1.10	0.86	0.84	3.83	3682	463	2	0	3	11	0	logfile
✔	7USB	26731	2024-09-23	2022-04-23	3.1	3.28	3.18	3.3	0.013	1.72	0.0	0.11	10.32	0.01	2.590	1.61	1.39	5.5	94.5	0.0	-0.28	0.59	0.76	5.40	3.3	0.003	0.65	0.0	0.05	12.90	0.00	2.508	5.46	2.08	4.0	96.0	0.0	-1.27	1.34	0.59	0.82	5.25	1661	213	3	0	5	0	0	logfile
✔	6XJH	22210	2024-09-24	2020-06-23	3.6	2.83	—	3.6	0.019	1.64	0.0	0.09	11.43	0.01	2.173	3.03	0.48	1.5	98.5	0.0	1.10	0.66	0.74	1.98	3.7	0.003	0.70	0.0	0.04	16.90	0.00	1.934	13.60	4.28	3.1	96.9	0.0	0.95	1.62	0.68	0.76	1.55	7596	940	6	0	4	0	0	logfile
✔	6oWT	20217	2024-09-26	2019-05-10	3.8	4.08	—	4.0	0.003	0.61	0.0	0.04	12.40	0.01	2.304	4.41	2.31	4.4	95.6	0.0	-3.98	0.77	0.76	1.52	4.0	0.003	0.68	0.0	0.04	15.33	0.00	2.514	9.66	2.67	4.2	95.8	0.0	0.36	0.67	0.78	0.76	0.99	11649	1575	6	0	0	0	0	logfile
✔	7SRQ	25401	2024-09-23	2021-11-08	2.7	2.17	—	1.9	0.008	0.80	0.0	0.05	14.14	0.01	2.296	8.67	1.50	2.8	97.2	0.0	0.29	0.70	0.72	4.55	1.9	0.003	0.73	0.0	0.04	15.10	0.00	2.627	7.65	1.50	2.0	98.0	0.0	2.37	1.01	0.72	0.76	3.11	1960	254	2	0	2	0	0	logfile
✔	6i2i	0331	2024-09-24	2018-11-01	3.6	3.72	—	3.7	0.009	1.17	0.0	0.06	16.64	0.01	2.019	7.46	0.28	7.1	92.9	0.0	-5.22	0.74	0.74	2.16	3.8	0.004	0.73	0.0	0.05	15.99	0.00	1.878	12.38	3.59	3.5	96.5	0.0	-1.63	0.83	0.76	0.75	1.35	6830	856	4	0	5	0	0	logfile
✔	7XY1	33507	2024-09-25	2022-05-31	3.3	3.36	—	3.3	0.005	0.76	6.0	0.06	13.22	0.01	2.035	16.43	0.97	8.4	91.0	0.6	-2.22	0.76	0.83	3.69	3.3	0.003	0.63	0.0	0.05	15.08	0.00	2.474	8.33	1.62	9.3	90.5	0.2	-2.43	0.33	0.78	0.85	2.94	11550	1536	3	0	0	0	0	logfile
✔	7WM0	32596	2024-09-23	2022-01-14	3.35	3.62	—	3.7	0.009	1.22	0.0	0.08	12.60	0.01	2.405	9.08	0.28	5.4	94.6	0.0	-2.87	0.69	0.56	0.97	3.6	0.004	0.81	0.0	0.05	16.21	0.00	2.592	12.10	4.96	6.4	93.6	0.0	-1.59	2.05	0.76	0.67	0.79	3376	432	4	0	1	0	0	logfile
✔	7Q6Z	13860	2024-09-25	2021-11-09	3.59	3.59	3.63	3.6	0.008	0.69	0.0	0.04	14.58	0.00	1.945	7.30	0.00	4.8	95.2	0.0	1.64	0.56	0.72	2.00	3.7	0.004	0.57	0.0	0.04	15.67	0.00	2.401	5.88	1.36	4.4	95.6	0.0	2.10	0.46	0.56	0.71	1.56	9754	597	3	0	4	0	4784	logfile
✔	6XQo	22291	2024-09-23	2020-07-09	3.1	3.54	—	3.5	0.004	0.57	0.0	0.04	15.61	0.00	1.956	9.56	3.52	4.4	95.6	0.0	-2.83	0.76	0.75	2.70	3.5	0.003	0.63	0.0	0.04	16.85	0.00	2.252	7.26	6.57	2.9	97.1	0.0	0.67	1.25	0.76	0.76	1.31	4301	560	4	0	4	0	0	logfile
✔	7X1R	32947	2024-09-24	2022-02-24	3.9	3.98	—	3.9	0.007	0.75	0.0	0.05	14.25	0.00	2.036	9.01	0.25	2.3	97.7	0.0	-0.91	0.74	0.82	1.82	3.9	0.004	0.72	0.0	0.05	17.15	0.00	2.484	8.82	4.26	3.8	96.2	0.0	0.48	1.76	0.75	0.83	1.60	7608	970	4	0	4	0	0	logfile
✔	6ZZU	11587	2024-09-25	2020-08-05	3.5	2.41	3.59	3.1	0.005	0.96	0.0	0.05	16.19	0.01	2.125	10.37	0.17	4.9	95.1	0.0	-4.89	0.79	0.78	3.19	3.1	0.004	0.88	0.0	0.05	17.73	0.00	2.195	20.32	3.56	5.3	94.7	0.0	-1.17	0.70	0.79	0.78	2.13	10760	1340	12	0	4	4	0	logfile
✔	6UJC	20796	2024-09-25	2019-10-02	3.56	3.89	—	3.9	0.014	1.40	0.0	0.09	11.40	0.01	1.792	0.44	0.11	3.0	97.0	0.0	0.47	0.72	0.75	2.35	3.9	0.003	0.66	0.0	0.05	13.21	0.00	2.004	6.40	1.93	3.7	96.3	0.0	-0.22	0.74	0.74	0.78	2.11	9209	1184	11	0	23	0	0	logfile
✔	7F46	31444	2024-09-24	2021-06-17	4.79	5.15	—	3.3	0.006	0.84	0.0	0.05	13.32	0.01	2.218	12.18	0.00	8.9	91.1	0.0	-2.90	0.77	0.60	—	4.4	0.003	0.74	0.0	0.05	13.13	0.01	2.467	14.19	0.00	6.1	93.9	0.0	-1.59	1.12	0.79	0.64	—	6564	842	6	0	2	0	0	logfile
✔	8HHL	34803	2024-09-24	2022-11-16	2.87	3.25	2.89	3.1	0.004	0.50	0.0	0.04	22.36	0.00	2.126	6.49	2.29	1.4	98.6	0.0	2.28	0.77	0.81	3.37	3.1	0.004	0.57	0.0	0.04	22.89	0.00	1.923	5.39	2.50	0.8	99.2	0.0	2.97	2.37	0.82	0.85	3.72	6971	592	6	111	4	0	0	logfile
✔	9G2U	50984	2024-09-23	2024-07-11	3.45	4.13	3.43	3.8	0.011	1.37	0.0	0.10	12.82	0.02	2.127	9.87	0.26	1.3	98.7	0.0	1.40	0.67	0.77	0.82	3.8	0.003	0.51	0.0	0.03	16.06	0.00	2.565	6.99	1.80	0.4	99.6	0.0	6.36	4.28	0.71	0.83	0.58	3634	456	2	0	0	0	0	logfile
✔	7WLC	32581	2024-09-23	2022-01-13	4.0	4.24	—	4.1	0.003	0.70	0.0	0.04	13.71	0.00	2.198	15.62	0.00	6.1	93.9	0.0	-1.35	0.71	0.77	—	4.1	0.004	0.82	0.0	0.05	16.16	0.00	2.515	15.16	2.79	6.8	93.2	0.0	-1.46	0.51	0.72	0.78	—	3307	430	3	0	0	0	0	logfile

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