Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6URo	20861	2024-09-29	2019-10-23	3.6	3.72	—	3.7	0.009	1.05	1.0	0.06	10.43	0.01	2.077	8.87	0.58	7.6	92.3	0.1	-4.76	0.65	0.68	1.99	3.7	0.005	0.79	0.0	0.05	15.88	0.00	2.456	15.30	2.33	7.3	92.7	0.0	-1.93	1.48	0.70	0.76	1.76	22401	2747	7	8	3	0	0	logfile
✔	6WUC	21910	2024-09-25	2020-05-04	3.23	3.36	—	3.3	0.004	0.73	1.0	0.05	13.18	0.00	1.351	17.80	2.97	9.0	90.4	0.6	-3.18	0.71	0.85	2.31	3.3	0.003	0.67	0.0	0.04	16.01	0.00	2.426	7.91	2.97	8.8	91.2	0.0	0.17	0.97	0.71	0.87	1.84	10284	1266	5	0	0	0	0	logfile
✔	7XW2	33489	2024-09-24	2022-05-26	3.04	3.31	3.11	3.3	0.007	1.05	2.0	0.07	17.35	0.01	1.891	7.50	0.92	4.8	95.2	0.0	-3.30	0.66	0.71	1.93	3.3	0.003	0.62	0.0	0.04	18.41	0.01	2.317	6.84	1.69	4.2	95.8	0.0	-0.44	1.02	0.66	0.72	1.82	6992	725	3	54	2	0	0	logfile
✔	7JGS	22330	2024-09-29	2020-07-19	3.2	3.82	3.22	3.4	0.006	0.94	0.0	0.05	18.33	0.01	1.392	4.10	0.18	2.7	97.3	0.0	-3.49	0.86	0.87	2.76	3.5	0.003	0.60	0.0	0.04	18.69	0.00	1.918	5.83	1.31	2.7	97.3	0.0	1.96	1.05	0.87	0.89	1.77	21743	2528	13	70	8	0	0	logfile
✔	7JPK	22414	2024-09-28	2020-08-09	3.0	3.13	—	3.1	0.007	0.86	1.0	0.05	19.60	0.01	2.047	12.75	8.84	6.8	93.0	0.1	-3.85	0.67	0.85	2.52	3.1	0.004	0.66	0.0	0.04	18.51	0.00	2.324	7.04	3.21	5.2	94.8	0.0	-0.56	0.46	0.67	0.86	2.25	18591	2257	5	0	12	0	0	logfile
✔	7XUF	33467	2024-09-27	2022-05-18	3.3	3.58	3.39	3.6	0.003	0.58	0.0	0.04	14.57	0.00	2.137	4.75	0.00	5.2	94.8	0.0	-1.36	0.58	0.77	2.06	3.6	0.002	0.55	0.0	0.04	16.12	0.00	2.492	3.99	1.18	4.6	95.4	0.0	-0.09	2.60	0.53	0.79	1.76	15041	1864	6	0	3	0	0	logfile
✔	8DMY	27549	2024-09-26	2022-07-09	3.07	3.43	3.15	3.4	0.004	0.62	0.0	0.05	18.68	0.00	2.379	4.32	0.63	3.3	96.7	0.0	-1.24	0.57	0.84	2.69	3.4	0.003	0.63	0.0	0.05	17.52	0.00	2.452	3.08	2.61	4.3	95.7	0.0	-0.10	1.02	0.64	0.88	2.07	11796	1494	8	0	8	0	0	logfile
✔	8G6R	29779	2024-09-25	2023-02-15	3.4	4.07	3.37	3.8	0.005	0.51	0.0	0.04	14.61	0.00	1.919	8.84	0.00	4.7	95.3	0.0	-0.24	0.85	0.84	2.56	3.8	0.003	0.70	0.0	0.04	16.29	0.00	2.516	10.05	2.95	2.5	97.5	0.0	0.52	1.53	0.85	0.86	1.65	9406	1075	6	40	2	0	0	logfile
✔	8DPF	27633	2024-09-24	2022-07-15	2.84	2.18	2.90	2.0	0.004	0.74	0.0	0.06	11.29	0.00	2.093	3.46	0.12	1.8	98.2	0.0	1.40	0.78	0.77	4.38	2.0	0.004	0.66	0.0	0.04	14.67	0.00	2.579	3.52	2.32	2.3	97.7	0.0	1.16	1.35	0.80	0.80	3.26	8160	1093	6	0	2	0	0	logfile
✔	7AWT	11930	2024-09-28	2020-11-09	2.73	3.29	—	3.2	0.012	1.12	8.0	1.95	14.80	0.01	1.618	15.63	1.58	8.0	92.0	0.0	-3.38	0.67	0.74	3.45	3.2	0.015	2.83	0.0	0.59	16.43	0.00	2.025	6.72	1.63	5.7	94.3	0.0	-0.80	1.17	0.64	0.71	2.86	18891	2375	17	0	18	125	0	logfile
✔	7URD	26709	2024-09-23	2022-04-21	2.92	3.41	2.97	3.3	0.017	0.95	0.0	0.83	26.24	0.00	2.177	10.24	0.00	5.0	95.0	0.0	-2.44	0.59	0.86	3.86	3.3	0.003	1.10	0.0	0.12	19.94	0.00	2.458	5.49	1.04	3.6	96.4	0.0	1.28	0.96	0.55	0.85	3.23	5534	678	5	0	6	0	0	logfile
✔	8D3U	27164	2024-09-28	2022-06-01	3.7	3.38	3.74	3.6	0.005	1.15	1.0	0.05	17.66	0.00	1.392	12.21	0.63	5.2	94.7	0.1	0.50	0.64	0.81	1.41	3.6	0.003	0.66	0.0	0.04	17.75	0.00	2.450	9.05	2.62	5.0	94.9	0.1	0.72	0.93	0.65	0.82	1.47	10121	1287	4	0	2	0	0	logfile
✔	7E4T	30987	2024-09-29	2021-02-15	3.0	3.26	3.08	3.3	0.007	0.79	0.0	0.04	14.09	0.00	2.031	6.50	1.01	1.1	98.9	0.0	0.77	0.50	0.68	3.26	3.3	0.003	0.51	0.0	0.04	16.46	0.00	2.331	5.18	3.00	1.5	98.5	0.0	2.65	1.21	0.70	0.85	3.04	22276	2656	8	0	24	0	0	logfile
✔	7ZSD	14930	2024-09-23	2022-05-06	3.29	3.62	3.56	3.6	0.003	0.60	0.0	0.05	17.98	0.00	2.226	9.82	0.00	7.0	93.0	0.0	-0.09	0.38	0.74	2.01	3.6	0.003	0.69	0.0	0.05	15.93	0.00	2.500	9.34	3.59	7.4	92.6	0.0	-0.39	0.41	0.38	0.77	1.57	2120	261	3	0	2	0	0	logfile
✔	8CTL	26994	2024-09-24	2022-05-16	3.1	3.52	3.12	3.3	0.009	1.32	4.0	0.09	27.58	0.01	2.280	32.18	7.20	12.1	87.4	0.5	-5.68	0.62	0.46	0.80	3.3	0.004	0.70	0.0	0.04	24.90	0.00	2.461	9.58	2.59	3.0	97.0	0.0	-1.02	2.47	0.81	0.81	2.68	8138	401	4	233	0	0	0	logfile
✔	8H1T	34431	2024-09-27	2022-10-04	3.0	3.40	1.70	3.2	0.003	0.53	0.0	0.04	24.61	0.00	1.336	10.82	0.00	2.2	97.8	0.0	2.26	0.72	0.67	1.40	3.2	0.004	0.69	0.0	0.04	26.36	0.00	2.173	10.35	2.76	4.0	96.0	0.0	1.35	0.66	0.76	0.74	1.50	17365	1323	14	334	0	0	0	logfile
✔	8GZ3	34389	2024-09-25	2022-09-24	3.3	3.13	—	3.1	0.012	1.45	3.0	0.10	15.00	0.01	2.142	5.81	1.74	1.8	98.2	0.0	-0.20	0.63	0.77	2.77	3.1	0.003	0.59	0.0	0.03	14.03	0.00	2.455	4.44	1.74	1.2	98.8	0.0	0.78	1.18	0.71	0.83	3.21	8542	789	7	0	434	1	0	logfile
✔	7D4P	30575	2024-09-29	2020-09-24	2.7	3.03	2.86	3.0	0.007	0.80	0.0	0.04	13.90	0.00	2.036	4.62	0.67	1.2	98.8	0.0	2.42	0.58	0.76	3.11	3.0	0.004	0.52	0.0	0.04	16.07	0.00	2.405	3.84	1.47	1.7	98.3	0.0	2.63	0.54	0.60	0.79	2.81	22472	2676	8	0	28	0	0	logfile
✔	7DD6	30645	2024-09-26	2020-10-27	3.2	3.88	—	3.7	0.008	0.81	0.0	0.05	16.89	0.00	2.126	16.92	0.07	5.3	94.7	0.0	-3.07	0.70	0.77	2.12	3.7	0.003	0.67	0.0	0.05	16.32	0.00	2.352	7.58	2.75	2.9	97.1	0.0	-0.18	0.74	0.72	0.81	1.94	12678	1585	8	0	22	0	0	logfile
✔	7E7Q	31002	2024-09-27	2021-02-26	3.3	3.41	—	3.4	0.011	1.08	0.0	0.06	17.67	0.01	1.683	10.13	1.16	11.2	88.4	0.5	-2.87	0.71	0.85	3.04	3.4	0.003	0.66	0.0	0.04	15.95	0.00	1.981	4.23	1.68	7.1	92.9	0.0	-1.01	0.40	0.71	0.86	2.09	15279	1958	4	0	21	0	0	logfile

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