Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G9W	29880	2024-09-27	2023-02-22	4.66	7.51	4.84	4.7	0.008	1.36	3.0	0.07	19.42	0.01	2.186	11.27	0.00	8.8	91.1	0.1	-4.89	0.86	0.81	—	4.7	0.003	0.74	0.0	0.04	12.48	0.00	2.356	11.03	0.00	6.3	93.7	0.0	-1.86	1.21	0.87	0.84	—	17135	1983	53	0	120	0	0	logfile
✔	7YNR	33969	2024-09-23	2022-07-31	2.9	2.79	1.55	3.2	0.003	0.46	0.0	0.05	10.05	0.00	2.424	7.49	0.00	1.7	98.3	0.0	-3.30	0.41	0.87	6.76	3.2	0.002	0.46	0.0	0.05	12.90	0.00	2.622	3.65	0.00	4.0	96.0	0.0	-1.89	0.22	0.42	0.88	5.75	2526	366	6	0	0	0	0	logfile
✔	7SC0	25007	2024-09-25	2021-09-26	3.4	3.72	—	3.8	0.003	0.52	0.0	0.04	10.01	0.00	2.479	1.29	0.00	7.9	92.1	0.0	-2.84	0.69	0.81	2.75	3.8	0.004	0.61	0.0	0.04	14.06	0.00	2.639	0.73	2.02	9.1	90.1	0.8	-0.76	1.49	0.67	0.82	2.18	11638	1419	11	0	0	0	0	logfile
✔	7LWD	23545	2024-09-24	2021-03-01	3.65	3.91	3.58	3.9	0.011	0.97	0.0	0.04	16.27	0.00	2.024	11.24	0.00	6.4	93.6	0.0	-4.15	0.67	0.81	2.29	3.9	0.003	0.64	0.0	0.04	16.37	0.00	2.411	9.27	2.33	6.6	93.4	0.0	-1.38	0.43	0.67	0.82	2.14	6163	769	4	0	3	0	0	logfile
✔	8CSP	26966	2024-09-28	2022-05-13	2.66	2.56	2.70	2.8	0.004	0.65	0.0	0.39	18.40	0.01	1.957	2.81	0.00	1.7	98.3	0.0	0.74	0.72	0.79	3.50	2.8	0.004	0.84	1.0	0.12	19.61	0.00	1.945	5.43	1.46	2.0	98.0	0.0	1.62	0.48	0.72	0.81	3.07	69302	6645	40	738	38	0	0	logfile
✔	7AiN	11799	2024-09-26	2020-09-28	3.2	3.71	3.29	3.6	0.011	0.93	0.0	0.06	13.50	0.01	2.282	9.81	0.00	2.8	97.1	0.1	-1.55	0.66	0.78	1.92	3.6	0.003	0.64	0.0	0.04	14.86	0.00	2.537	7.41	1.52	2.6	97.2	0.1	1.27	0.96	0.56	0.75	1.12	13904	1808	6	0	8	0	0	logfile
✔	7NFY	12306	2024-09-29	2021-02-08	3.9	4.30	3.98	3.9	0.011	1.27	1.0	0.07	12.81	0.01	2.011	5.76	0.00	8.5	91.5	0.0	-2.41	0.85	0.79	1.54	3.9	0.002	0.56	0.0	0.05	13.95	0.00	1.785	5.98	0.49	3.9	96.1	0.0	-0.30	0.39	0.85	0.78	1.28	74644	4656	13	0	35	0	37485	logfile
✔	7EY5	31378	2024-09-23	2021-05-29	3.4	3.68	—	3.5	0.005	0.81	0.0	0.05	13.84	0.01	2.161	11.76	0.00	12.9	87.1	0.0	-3.63	0.68	0.82	2.63	3.6	0.004	0.81	0.0	0.05	15.12	0.00	2.438	8.04	2.00	10.0	90.0	0.0	-2.38	0.45	0.68	0.83	1.96	5072	648	5	0	0	0	0	logfile
✔	7ZDE	14643	2024-09-25	2022-03-29	3.17	3.28	3.06	3.2	0.008	0.78	0.0	0.05	14.80	0.00	2.067	10.89	0.00	2.9	97.1	0.0	-3.00	0.73	0.89	3.55	3.2	0.003	0.62	0.0	0.04	15.51	0.00	2.076	6.71	1.82	2.2	97.8	0.0	1.03	0.40	0.72	0.89	2.24	9014	1159	3	0	2	0	0	logfile
✔	8E96	27957	2024-09-29	2022-08-26	3.38	2.51	—	2.0	0.003	0.55	0.0	0.04	14.28	0.00	2.149	8.15	0.00	6.5	93.4	0.1	-1.58	0.78	0.75	2.05	2.0	0.003	0.58	0.0	0.04	15.75	0.00	2.513	5.75	1.23	6.0	93.9	0.1	-1.20	0.92	0.79	0.77	1.76	21924	2838	12	0	6	0	0	logfile
✔	7Li8	23363	2024-09-24	2021-01-26	3.9	4.37	—	4.3	0.002	0.60	0.0	0.04	10.90	0.00	2.230	6.92	0.00	5.3	94.7	0.0	-3.23	0.62	0.72	1.26	4.3	0.004	0.74	0.0	0.04	14.77	0.00	2.390	9.42	4.51	6.7	93.3	0.0	-0.72	2.45	0.68	0.76	1.83	6181	767	5	0	14	0	0	logfile
✔	7MPG	23933	2024-09-28	2021-05-04	3.4	3.98	—	4.0	0.003	0.71	0.0	0.06	13.66	0.00	1.908	15.24	0.00	6.1	93.7	0.2	-1.25	0.57	0.67	1.15	3.9	0.005	0.80	0.0	0.05	16.50	0.01	2.118	12.55	3.45	5.6	94.3	0.2	-0.77	0.88	0.59	0.81	1.16	20366	2640	12	0	3	0	0	logfile
✔	7SYG	25527	2024-09-30	2021-11-25	4.3	3.38	4.15	3.2	0.003	0.74	0.0	0.04	22.16	0.01	2.257	4.87	0.00	5.1	94.8	0.0	-2.54	0.65	0.65	—	3.2	0.005	0.78	0.0	0.04	22.35	0.01	2.155	13.72	0.05	8.2	91.8	0.0	-1.82	1.10	0.66	0.68	—	78773	4891	38	1859	2	0	0	logfile
✔	8CSQ	26967	2024-09-28	2022-05-13	2.54	2.41	2.53	2.7	0.004	0.64	0.0	0.39	18.55	0.01	1.958	2.63	0.00	1.7	98.3	0.0	1.13	0.72	0.79	3.59	2.7	0.004	0.79	0.0	0.12	19.69	0.00	1.992	5.19	1.65	1.9	98.1	0.0	1.77	1.57	0.71	0.81	3.28	67706	6265	40	803	37	0	0	logfile
✔	6VRH	21368	2024-09-24	2020-02-07	3.3	3.68	3.56	3.6	0.004	0.60	0.0	0.04	13.50	0.00	2.212	9.91	0.00	5.1	94.9	0.0	-3.01	0.45	0.70	2.12	3.6	0.003	0.59	0.0	0.04	15.30	0.00	2.542	8.11	3.85	5.1	94.9	0.0	-0.19	0.39	0.48	0.74	1.54	6142	764	4	0	5	0	0	logfile
✔	8CSR	26968	2024-09-28	2022-05-13	2.54	2.48	2.56	2.6	0.004	0.65	0.0	0.38	18.52	0.01	1.910	2.68	0.00	1.7	98.3	0.0	1.19	0.72	0.78	3.16	2.6	0.005	0.81	0.0	0.12	19.62	0.00	1.900	4.97	1.72	2.0	98.0	0.0	1.78	1.17	0.72	0.81	2.96	69868	6354	42	854	43	46	0	logfile
✔	7YoN	33984	2024-09-25	2022-08-01	2.95	2.24	—	3.0	0.003	0.49	0.0	0.04	13.74	0.00	2.155	3.67	0.00	2.7	97.3	0.0	0.20	0.78	0.83	3.97	3.0	0.003	0.90	1.0	0.05	15.77	0.00	2.088	3.34	2.29	2.3	97.6	0.1	1.23	0.37	0.78	0.85	3.08	9161	1166	8	0	0	2	0	logfile
✔	7WiJ	32531	2024-09-26	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.51	0.0	0.03	15.58	0.00	2.626	3.20	1.66	0.6	99.4	0.0	3.52	0.28	0.71	0.87	1.45	12396	1602	6	0	0	0	0	logfile
✔	8G9X	29881	2024-09-27	2023-02-22	4.46	7.28	4.57	4.4	0.008	1.32	2.0	0.07	19.10	0.01	2.188	9.75	0.00	9.0	90.9	0.2	-4.84	0.87	0.83	—	4.4	0.003	0.74	0.0	0.04	12.77	0.00	2.391	11.98	0.00	6.9	93.1	0.0	-1.87	1.59	0.87	0.85	—	17036	1983	53	0	111	0	0	logfile
✔	7Li9	23364	2024-09-24	2021-01-26	3.9	4.05	—	4.0	0.003	0.56	0.0	0.04	13.56	0.00	2.309	6.39	0.00	5.4	94.6	0.0	-3.52	0.64	0.73	1.52	4.0	0.003	0.66	0.0	0.04	15.10	0.00	2.474	7.93	2.80	8.3	91.7	0.0	-0.98	1.33	0.69	0.82	1.64	6174	767	5	0	13	0	0	logfile

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