Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K6Q	22692	2024-09-27	2020-09-21	3.1	3.63	3.21	3.5	0.006	0.78	0.0	0.04	24.80	0.01	2.108	3.36	0.00	2.3	97.7	0.0	1.37	0.81	0.80	3.65	3.5	0.004	0.56	0.0	0.03	25.90	0.00	2.545	7.71	1.11	3.0	97.0	0.0	2.14	1.10	0.82	0.83	2.63	15578	1229	13	292	1	0	0	logfile
✔	8CK0	16688	2024-09-23	2023-02-14	3.8	3.83	3.70	3.8	0.005	0.80	0.0	0.05	16.63	0.01	2.259	15.81	0.00	5.3	94.7	0.0	0.79	0.17	0.78	1.47	3.8	0.003	0.71	0.0	0.04	18.09	0.00	2.414	9.25	4.11	3.6	96.4	0.0	2.05	0.75	0.18	0.79	1.48	3762	478	1	0	0	0	0	logfile
✔	8DY7	27777	2024-09-26	2022-08-03	3.18	3.44	3.26	3.4	0.003	0.65	0.0	0.04	17.41	0.00	1.507	3.64	0.00	4.3	95.7	0.0	0.22	0.71	0.81	2.62	3.4	0.006	0.69	0.0	0.04	18.49	0.00	2.002	3.48	0.90	5.7	94.3	0.0	0.02	0.33	0.73	0.84	2.44	61085	3612	14	149	5	0	29915	logfile
✔	7F3E	31432	2024-09-28	2021-06-16	3.62	3.40	3.51	3.7	0.005	0.71	0.0	0.05	15.18	0.00	2.242	12.60	0.00	3.8	96.2	0.0	-0.41	0.63	0.67	2.23	3.6	0.003	0.62	0.0	0.04	17.65	0.00	2.368	10.23	2.74	2.5	97.5	0.0	-0.02	1.22	0.65	0.72	2.15	18564	2256	12	0	0	0	0	logfile
✔	7M6Q	23704	2024-09-27	2021-03-26	2.91	3.75	2.97	3.5	0.009	1.16	5.0	0.07	15.90	0.01	2.041	5.71	0.00	3.1	96.9	0.0	-0.39	0.82	0.82	2.70	3.5	0.004	0.69	0.0	0.04	17.20	0.00	2.478	7.24	2.01	3.3	96.7	0.0	0.64	0.54	0.81	0.83	3.35	14725	1800	14	0	10	0	0	logfile
✔	7oCY	12816	2024-09-24	2021-04-28	4.25	4.55	4.29	4.4	0.003	0.62	0.0	0.04	12.49	0.00	1.980	9.97	0.00	4.9	95.1	0.0	-0.08	0.73	0.77	—	4.4	0.003	0.67	0.0	0.04	12.70	0.00	2.407	8.40	0.00	2.8	97.2	0.0	0.94	1.14	0.74	0.78	—	7994	1243	3	0	0	0	0	logfile
✔	8SEH	40411	2024-09-23	2023-04-10	2.9	2.68	2.71	3.1	0.026	2.09	10.0	0.12	10.93	0.01	2.507	0.00	0.00	7.0	93.0	0.0	-2.29	0.52	0.80	4.20	3.0	0.005	0.75	0.0	0.05	17.15	0.00	2.585	7.39	4.38	6.8	93.2	0.0	-3.20	1.33	0.44	0.82	3.03	5570	730	10	0	0	0	0	logfile
✔	8FMX	29299	2024-09-25	2022-12-26	3.37	4.30	3.60	3.9	0.005	0.93	0.0	0.06	14.52	0.01	2.404	0.43	0.00	2.6	97.4	0.0	-1.06	0.89	0.86	2.70	3.9	0.002	0.57	0.0	0.04	14.14	0.00	2.512	3.70	0.35	2.6	97.4	0.0	0.98	1.23	0.88	0.87	2.29	10329	1335	9	0	12	0	0	logfile
✔	7KSR	23024	2024-09-26	2020-11-24	4.1	4.28	—	4.2	0.004	0.70	0.0	0.05	11.74	0.00	2.200	1.91	0.00	5.5	94.5	0.0	-4.46	0.65	0.70	—	4.2	0.004	0.72	0.0	0.05	13.19	0.00	1.595	9.70	0.00	5.9	94.1	0.0	-1.33	1.11	0.70	0.78	—	11863	1524	5	0	7	0	0	logfile
✔	7NAo	24276	2024-09-26	2021-06-22	2.9	3.59	—	3.3	0.005	0.73	0.0	0.05	12.92	0.01	2.090	2.54	0.00	1.3	98.6	0.1	1.00	0.87	0.85	3.09	3.3	0.003	0.71	0.0	0.04	15.91	0.00	2.109	8.86	1.62	2.3	97.7	0.0	1.47	1.83	0.87	0.86	2.64	58083	7741	35	0	0	0	0	logfile
✔	7RTN	24684	2024-09-23	2021-08-13	3.4	3.47	—	3.5	0.004	0.63	0.0	0.04	14.58	0.00	2.298	6.03	0.00	6.1	93.9	0.0	0.60	0.31	0.74	3.40	3.5	0.003	0.60	0.0	0.04	16.66	0.00	2.556	5.59	3.42	5.0	95.0	0.0	1.29	0.35	0.31	0.79	2.97	6018	810	3	0	0	0	0	logfile
✔	7X7A	33040	2024-09-25	2022-03-09	3.2	3.65	3.23	3.6	0.002	0.49	0.0	0.04	16.63	0.00	2.134	8.04	0.00	5.1	94.8	0.2	-0.24	0.78	0.82	3.29	3.6	0.003	0.55	0.0	0.04	17.71	0.00	2.522	6.47	2.17	5.6	94.3	0.2	-0.04	0.30	0.78	0.84	2.65	10278	1241	3	33	4	0	0	logfile
✔	6V00	20966	2024-09-27	2019-11-16	3.1	3.54	—	3.5	0.007	0.95	0.0	0.05	10.23	0.01	2.315	2.58	0.00	4.3	95.5	0.2	-3.43	0.67	0.83	3.07	3.5	0.003	0.56	0.0	0.04	14.57	0.00	2.328	3.48	1.69	2.4	97.6	0.0	2.20	0.68	0.64	0.83	2.09	17460	2180	16	0	8	0	0	logfile
✔	7M6M	23700	2024-09-26	2021-03-26	3.09	2.99	3.00	3.2	0.008	1.31	0.0	0.08	11.55	0.01	2.383	3.69	0.00	3.7	96.3	0.0	0.33	0.80	0.82	2.77	3.3	0.004	0.76	0.0	0.05	15.43	0.00	2.501	9.45	2.33	2.8	97.2	0.0	0.59	0.72	0.82	0.84	2.39	14190	1720	15	0	15	0	0	logfile
✔	7QUD	14148	2024-09-24	2022-01-17	3.47	3.26	—	3.3	0.004	0.62	0.0	0.04	16.74	0.01	2.033	11.70	0.00	3.5	96.5	0.0	-0.13	0.67	0.77	2.12	3.2	0.004	0.67	0.0	0.05	18.60	0.01	1.963	10.64	3.34	3.7	96.3	0.0	0.03	0.44	0.67	0.78	2.17	6696	844	4	0	3	0	0	logfile
✔	6G8Z	4362	2024-09-27	2018-04-10	3.66	3.88	3.72	3.8	0.005	0.77	0.0	0.04	8.70	0.00	2.028	0.22	0.00	3.8	96.2	0.0	-0.63	0.66	0.79	4.14	3.8	0.003	0.57	0.0	0.04	13.96	0.00	2.402	4.48	1.58	3.2	96.8	0.0	2.43	1.96	0.69	0.85	2.58	15966	1908	6	0	0	0	0	logfile
✔	5Z1W	6877	2024-09-26	2017-12-28	3.38	3.50	—	3.5	0.011	0.93	0.0	0.06	10.30	0.01	2.016	10.61	0.00	4.7	95.3	0.0	-3.34	0.65	0.84	4.86	3.5	0.003	0.58	0.0	0.04	14.31	0.00	2.491	5.16	1.56	2.8	97.2	0.0	1.50	0.67	0.67	0.86	2.97	13824	1716	8	0	12	0	0	logfile
✔	7KTP	23025	2024-09-26	2020-11-24	4.8	4.79	—	4.6	0.005	0.73	0.0	0.05	11.99	0.00	2.221	2.15	0.00	4.5	95.5	0.0	-4.13	0.71	0.69	—	4.6	0.003	0.68	0.0	0.04	13.09	0.00	2.330	11.14	0.00	5.3	94.7	0.0	-1.00	2.22	0.75	0.77	—	12008	1544	5	0	7	0	0	logfile
✔	7FD9	31537	2024-09-26	2021-07-16	4.0	4.34	3.85	3.8	0.007	1.28	0.0	0.13	17.54	0.00	2.266	9.05	0.00	6.4	93.6	0.0	-0.84	0.71	0.80	—	3.8	0.002	0.62	0.0	0.04	14.77	0.00	2.594	9.19	1.50	4.0	96.0	0.0	0.00	1.36	0.72	0.81	—	11476	1534	4	0	4	0	0	logfile
✔	6Y50	10688	2024-09-27	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	11.03	0.00	0.761	13.95	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.004	0.68	0.0	0.05	12.59	0.00	2.004	7.12	0.00	11.6	88.3	0.1	-1.68	0.55	0.72	0.73	—	14916	2537	10	50	3	0	0	logfile

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