Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D9N	27267	2024-09-24	2022-06-10	4.4	4.74	3.88	34.0	0.003	0.60	0.0	0.04	13.21	0.00	2.107	2.77	0.38	5.8	94.2	0.0	-0.81	0.28	-0.07	—	20.0	0.002	0.69	0.0	0.04	13.29	0.00	2.434	4.56	0.00	4.6	95.4	0.0	0.35	0.56	0.34	-0.06	—	7186	902	2	0	0	0	0	logfile
✔	8D43	27173	2024-09-24	2022-06-01	2.88	3.12	2.94	5.9	0.004	0.84	1.0	0.06	19.69	0.01	1.371	8.43	5.48	6.5	93.5	0.0	-1.48	0.17	-0.02	0.37	3.1	0.004	0.92	0.0	0.05	18.28	0.01	2.214	17.25	2.38	8.5	91.5	0.0	-1.89	2.69	0.40	0.34	0.78	7763	962	5	0	6	1	0	logfile
✔	8J5Y	33733	2024-09-25	2023-04-24	3.07	3.50	3.24	20.0	0.004	0.84	0.0	0.05	13.88	0.01	2.153	12.97	0.00	6.0	93.7	0.3	-1.55	0.08	0.00	0.39	3.4	0.005	0.94	0.0	0.05	16.17	0.01	2.453	16.44	1.82	9.2	90.6	0.1	-1.51	1.43	0.13	0.08	0.57	10905	1389	4	0	0	0	0	logfile
✔	8UQ6	42462	2024-09-25	2023-10-23	3.6	5.71	2.81	39.0	0.016	2.36	10.0	0.13	16.35	0.02	2.502	1.87	5.96	23.5	71.6	4.9	-4.36	0.19	0.00	0.38	5.5	0.004	0.87	0.0	0.05	16.60	0.01	2.351	7.50	2.38	20.0	79.5	0.5	-3.96	2.37	0.22	0.15	0.07	11700	765	1	0	0	0	5689	logfile
✔	8A1S	15086	2024-09-28	2022-06-02	4.0	3.83	3.95	37.0	0.008	0.74	0.0	0.05	14.73	0.00	1.988	10.18	0.97	3.9	96.0	0.2	-0.24	0.26	0.00	—	3.4	0.003	0.71	0.0	0.04	12.82	0.00	2.357	10.63	1.37	3.2	96.6	0.2	-0.88	1.56	0.31	0.17	—	67152	8528	32	0	32	0	0	logfile
✔	8RK9	19265	2024-09-23	2023-12-23	3.95	3.73	3.78	20.0	0.002	0.67	0.0	0.05	15.38	0.00	2.268	15.65	0.00	12.8	87.2	0.0	-3.79	0.16	0.00	1.69	7.8	0.003	0.77	0.0	0.05	16.84	0.01	2.538	15.49	3.53	7.1	92.9	0.0	-3.47	4.08	0.30	0.09	0.60	6138	816	6	0	0	0	0	logfile
✔	8GWB	34308	2024-09-29	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	17.30	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.003	0.82	0.0	0.04	18.12	0.01	2.100	16.91	2.65	7.8	92.1	0.1	-2.05	1.66	0.36	0.17	0.19	21879	2655	16	54	10	7	0	logfile
✔	7VZ3	32219	2024-09-27	2021-11-15	2.46	2.36	2.43	19.0	0.009	1.08	2.0	0.07	12.80	0.01	2.203	4.37	0.26	5.4	94.5	0.1	-1.44	0.12	0.02	0.32	2.2	0.002	0.61	0.0	0.04	14.22	0.00	2.527	8.42	1.42	4.3	95.6	0.1	-1.02	1.70	0.19	0.12	0.37	17415	2256	3	0	0	0	0	logfile
✔	5MSH	3565	2024-09-23	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.07	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.8	0.003	0.75	0.0	0.05	12.31	0.01	2.611	13.00	0.00	6.2	93.6	0.2	-1.01	1.91	0.04	0.14	—	4287	551	2	0	0	0	0	logfile
✔	6Qi8	4552	2024-09-27	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.004	0.90	0.0	0.05	17.87	0.01	2.185	14.58	2.35	7.5	92.5	0.0	-2.50	1.54	0.32	0.22	0.55	14789	1907	12	0	6	0	0	logfile
✔	7XoV	33360	2024-09-24	2022-05-01	3.0	3.23	3.00	6.0	0.019	1.84	0.0	0.09	10.85	0.02	2.322	6.84	0.90	3.0	96.9	0.1	0.50	0.14	0.02	0.62	3.3	0.005	0.98	0.0	0.05	15.45	0.01	2.542	12.22	2.02	4.1	95.7	0.2	-0.03	1.64	0.52	0.67	1.19	8218	1036	6	0	1	1	0	logfile
✔	6Z5U	11082	2024-09-28	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	12.69	0.01	0.901	4.89	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.1	0.003	0.70	0.0	0.04	14.26	0.00	2.078	9.20	1.38	3.8	96.1	0.0	0.52	1.51	0.27	0.14	0.60	17880	2334	14	0	4	0	0	logfile
✔	5VZL	8749	2024-09-26	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	17.27	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.002	0.66	0.0	0.04	18.12	0.00	1.459	9.05	1.33	4.8	95.2	0.0	-0.63	1.15	0.37	0.16	0.81	13915	1451	3	115	1	0	0	logfile
✔	8P50	17435	2024-09-26	2023-05-23	4.04	5.40	4.05	3.9	0.004	0.88	0.0	0.05	14.21	0.01	1.901	6.41	0.00	4.7	95.3	0.0	-1.98	0.62	0.03	—	3.9	0.003	0.69	0.0	0.04	14.14	0.00	1.988	6.06	0.14	3.9	96.0	0.1	0.62	1.30	0.61	0.02	—	13714	1735	3	0	2	0	0	logfile
✔	5M6S	3451	2024-09-23	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.63	0.0	0.03	17.89	0.00	2.491	5.65	0.00	6.2	93.8	0.0	2.23	2.29	0.02	0.07	—	1593	98	1	0	0	0	793	logfile
✔	7RTM	24683	2024-09-25	2021-08-13	3.4	3.54	3.61	20.0	0.031	3.05	44.0	0.18	16.56	0.03	1.051	1.40	2.80	6.8	93.0	0.3	-1.12	0.10	0.04	0.21	3.5	0.003	0.86	0.0	0.04	16.11	0.00	2.352	10.47	2.00	4.7	95.3	0.1	0.01	4.69	0.66	0.78	1.46	9161	1142	6	0	12	0	0	logfile
✔	6KFK	9974	2024-09-27	2019-07-08	4.1	4.28	—	15.0	0.015	1.99	0.0	0.08	10.94	0.01	1.444	20.13	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	6.8	0.004	0.87	0.0	0.05	13.01	0.00	2.304	15.80	0.01	6.9	92.3	0.8	-1.20	1.80	0.23	0.28	—	65076	8844	22	0	0	0	0	logfile
✔	8T2T	40987	2024-09-27	2023-06-06	3.0	3.39	3.19	9.5	0.006	0.97	0.0	0.05	24.84	0.01	1.982	4.25	0.00	4.5	95.0	0.5	-1.78	0.45	0.06	0.14	3.0	0.007	1.14	0.0	0.05	26.47	0.01	1.703	28.77	2.93	6.3	93.7	0.0	-2.26	2.53	0.74	0.69	1.62	14876	387	5	546	12	0	0	logfile
✔	6H5i	0140	2024-09-24	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.004	0.76	0.0	0.04	14.94	0.00	2.349	13.32	1.45	4.3	95.7	0.0	1.08	1.21	0.37	0.24	0.26	43900	5392	26	0	0	0	0	logfile
✔	8G9R	29874	2024-09-23	2023-02-21	3.28	3.68	2.90	44.0	0.003	0.59	0.0	0.05	16.84	0.01	2.542	2.24	0.00	5.7	94.3	0.0	-3.38	0.13	0.07	1.03	4.2	0.003	0.73	0.0	0.05	16.85	0.01	2.576	13.02	2.05	8.0	92.0	0.0	-3.77	2.57	0.26	0.34	2.06	3570	455	5	0	0	0	0	logfile

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